PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g100590.1
Common NameMTR_7g100590
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family AP2
Protein Properties Length: 472aa    MW: 52008.3 Da    PI: 5.9027
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g100590.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17138187155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Medtr7g100590.1 138 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 187
                      78*******************......55************************997 PP
2AP240.19.2e-13230280155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV+ +k  grW+A+   +     +k+++lg f+++ +Aa+a+++a+ k +g
  Medtr7g100590.1 230 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELDAARAYDKAAIKCNG 280
                      89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.17E-16138197IPR016177DNA-binding domain
PfamPF008475.4E-9138187IPR001471AP2/ERF domain
CDDcd000186.59E-12139197No hitNo description
PROSITE profilePS5103217.794139195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-17139196IPR001471AP2/ERF domain
SMARTSM003805.3E-33139201IPR001471AP2/ERF domain
PfamPF008474.5E-8230280IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-16230289IPR016177DNA-binding domain
CDDcd000184.18E-25230290No hitNo description
Gene3DG3DSA:3.30.730.101.5E-15231289IPR001471AP2/ERF domain
SMARTSM003804.3E-31231294IPR001471AP2/ERF domain
PROSITE profilePS5103215.435231288IPR001471AP2/ERF domain
PRINTSPR003674.7E-6232243IPR001471AP2/ERF domain
PRINTSPR003674.7E-6270290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MLDLNLNADS SLPLSSVVQM EDSSGSFDSS VVNAADTEDS CSYGDAYGYN FAILNNNASV  60
DNSTISGELQ HSGAGEAGVR TIQLFPANES GMISPSESSG WMNFSSDHHG GVPEQTAVVA  120
SRPQQVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR  180
AAIKFRGVDA DINFNVSDYD EDIKQMNNFT KEEFVHILRR QSTGFSRGSS KYRGVTLHKC  240
GRWEARMGQF LGKKYIYLGL FDSELDAARA YDKAAIKCNG REAVTNFEAS SYEGELTSQA  300
DNDDIKQNLD LNLGIAPPSN SDVQMMNMHH NGSGLQVQRN WDDMPVDKSV MFEDSGSRSL  360
NVQSSYGFPI ASEHQPPVWS GTNYFPVCKE RAIENRMESA PVPNWAWQLQ SPYNNGSTLI  420
LPNFSAAASS GFPSTTAADS QIHFPNITYL HPHFPTPVTN SSPIPSFYCR S*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g100590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625570.10.0floral homeotic protein APETALA 2 isoform X1
SwissprotB8AMA91e-110AP22_ORYSI; APETALA2-like protein 2
TrEMBLG7L1P70.0G7L1P7_MEDTR; AP2 domain transcription factor
STRINGAES817880.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105813041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-109related to AP2.7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]