PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g100510.1
Common NameMTR_7g100510
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 439aa    MW: 48916.3 Da    PI: 7.7403
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g100510.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32190245359
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh 
  Medtr7g100510.1 190 DGYNWRKYGQKQVKGSEYPRSYYKCTYPNCPVKKKVERSL-DGEIAEIVYKGEHNHG 245
                      9***************************************.***************5 PP
2WRKY105.13.8e-33361418259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k+vers +dpk +++tYeg+Hnhe
  Medtr7g100510.1 361 GDGFRWRKYGQKVVKGNPYPRSYYRCTSINCNVRKHVERSIDDPKSFVTTYEGKHNHE 418
                      5********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-29179247IPR003657WRKY domain
SuperFamilySSF1182901.28E-25187247IPR003657WRKY domain
SMARTSM007741.2E-36188246IPR003657WRKY domain
PfamPF031062.5E-25190244IPR003657WRKY domain
PROSITE profilePS5081123.422190247IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-33346420IPR003657WRKY domain
SuperFamilySSF1182906.93E-29354420IPR003657WRKY domain
PROSITE profilePS5081134.566355420IPR003657WRKY domain
SMARTSM007747.6E-39360419IPR003657WRKY domain
PfamPF031068.2E-26362418IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MMDIEEAERV VVAKPVASRP TCSSYKSFSE LLAGAIDSTP PIASSQTTIS AIRPKTVRFK  60
PAMNIPPSQV NISGGALSSS SDMDPKPDTN QSLIYKPMAK FVSQTTVSLL ANMGICSTNQ  120
QQPQKSRETN PQHLNHDNFR ANMSSKLHQN ITLPTETYQA TESCMMAPQN IEEDQKALPS  180
TNNADRPSYD GYNWRKYGQK QVKGSEYPRS YYKCTYPNCP VKKKVERSLD GEIAEIVYKG  240
EHNHGKPQHQ KRNSGATSGM ISDGMVQDKV WSNNSNQNER NEGRIENQVK ASLPDDSALE  300
TSCGLSGECE EGSKGFEAEE DDSRSKRRKN ENQSNEVAVS EEGLVEPHIV MQSSVDSEVL  360
GDGFRWRKYG QKVVKGNPYP RSYYRCTSIN CNVRKHVERS IDDPKSFVTT YEGKHNHEMP  420
LKNTTNMTSE KDSTTSLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-31190420877Probable WRKY transcription factor 4
2lex_A2e-31190420877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.72460.0leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g100510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1861360.0AC186136.3 Medicago truncatula chromosome 7 BAC clone mth2-5a14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625561.10.0WRKY transcription factor 44
RefseqXP_024625882.10.0WRKY transcription factor 44
RefseqXP_024625883.10.0WRKY transcription factor 44
RefseqXP_024625884.10.0WRKY transcription factor 44
TrEMBLG7L1N80.0G7L1N8_MEDTR; Putative transcription factor WRKY family
STRINGAES817790.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-107WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]