PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g096830.1
Common NameMTR_7g096830
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 241aa    MW: 27077.1 Da    PI: 5.9037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g096830.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-1698147355
              AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++GVr ++ +g+++AeIrd    + k  r+++g+f+tae Aa a+++a+ + +g
  Medtr7g096830.1  98 FRGVRTRP-WGKFAAEIRDsT--R-KGVRVWIGTFDTAEAAALAYDQAAFSTRG 147
                      89***999.**********32..2.24**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.5E-3397161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2897156IPR001471AP2/ERF domain
PROSITE profilePS5103221.85297155IPR001471AP2/ERF domain
PRINTSPR003671.8E-998109IPR001471AP2/ERF domain
CDDcd000185.72E-1898156No hitNo description
SuperFamilySSF541717.85E-2198156IPR016177DNA-binding domain
PfamPF008472.0E-1198147IPR001471AP2/ERF domain
PRINTSPR003671.8E-9121137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDFDSLLFQN QNQNLMYFPN NFSWELEEDF VNFFSDVNNY SNSSGSLSST ESNSSGSVLS  60
NEPLEVSSNT TYKQVIKETQ TSSPPPPPPI KESKKRAFRG VRTRPWGKFA AEIRDSTRKG  120
VRVWIGTFDT AEAAALAYDQ AAFSTRGSLA VLNFPEEVVR ESLKEMASNS KPLDEGTSPV  180
LALKRKHSMR KKSNKVSTKR IKSEYHSDQI QIETNINSQN LFVFEDLGAE YLDQLLSLTY  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-26981571574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.142250.0root
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g096830.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1391950.0BT139195.1 Medicago truncatula clone JCVI-FLMt-17K7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449889.11e-177ethylene-responsive transcription factor 1B
SwissprotQ8VYM07e-49ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLI3SFE81e-175I3SFE8_MEDTR; Ethylene-responsive transcription factor
STRINGAES884071e-108(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31133199
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.16e-42ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]