PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g091370.1
Common NameMTR_7g091370
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 234aa    MW: 26980.6 Da    PI: 8.9838
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g091370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.51.2e-34231142102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k+y ++ed+ ++ +isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF ++ Fkkg++ell+
  Medtr7g091370.1  23 FLLKTYMLVEDPITDGVISWNDEGTAFVVWQPAEFARDILPTLFKHSNFSSFVRQLNTYGFRKVATSR---------WEFCNERFKKGERELLS 107
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i+r+k 
  Medtr7g091370.1 108 EIRRRKA 114
                      ****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.0E-5119112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-3520112IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-3120112IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-3023112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-182346IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-186173IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406286IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-187486IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEGVVISEKG LLECGRKCTP SPFLLKTYML VEDPITDGVI SWNDEGTAFV VWQPAEFARD  60
ILPTLFKHSN FSSFVRQLNT YGFRKVATSR WEFCNERFKK GERELLSEIR RRKAWSNKQQ  120
QTVQNQDSDE DQRSSSTSST SGYTNLVDEN KRLKKENVVL NSELTSMKRK CKELLDLVSI  180
HTKKMEEEEA KDNDKRPMLF GVRLDVQQGE RRIKRTRAEI SENASILLSQ SCK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-202311220120Heat shock factor protein 1
5d5w_B1e-20211122104Putative transcription factor
5d5x_B1e-20211122104Putative transcription factor
5d5x_E1e-20211122104Putative transcription factor
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.246930.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g091370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2368350.0AC236835.2 Medicago truncatula strain A17 clone mte1-66f19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003625136.11e-173heat stress transcription factor B-3
SwissprotO222307e-70HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLG7KTH61e-171G7KTH6_MEDTR; Heat shock transcription factor
STRINGAES813541e-172(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.15e-68heat shock transcription factor B3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]