PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g090060.1

Common Name

MTR_7g090060

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

HRT-like

Protein Properties

Length: 380aa MW: 43097.1 Da PI: 10.3895

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g090060.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	59.7	4.7e-19	263	293	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l dGs+Ckr+Pv++R RC eHKGmRi Medtr7g090060.1 263 ICGVMLTDGSICKRPPVEKRVRCPEHKGMRI 293 8*****************************7 PP
2	HRT-like	62.2	7.5e-20	346	376	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCG+il+dGs+C+rqPvkgRKRC+eHKG+Ri Medtr7g090060.1 346 ICGIILDDGSTCRRQPVKGRKRCQEHKGRRI 376 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MVVNRLKREQ CDRTKHDSSF SRWKILIGPS DWEDYSKEKE GSTRYRIHNL PQKLGPGVYE 60 LGVAVSRSNL GREIYKLSTD PRRIVVVYLG KADNVRARLQ RYGRNGAHLS NTCMSDDSSL 120 RTGRSLFQEI FSQGFPIVYR WAPMQNEGDA LRTESQLLST FDYAWNTISN GTRRPDDIHQ 180 MLNKLASGTR TFSDVAKLIL PFTQKKVGIP IKSSKLHLTD DKLDEADSGS YNVLSRVFKF 240 NRSRPRIVQD TTVGSATNEN AKICGVMLTD GSICKRPPVE KRVRCPEHKG MRINASTTKA 300 IRSPKSELES IVRNAYRYQN ASHDVEDPPQ RTVKCHVEEG ITKTIICGII LDDGSTCRRQ 360 PVKGRKRCQE HKGRRIRAN*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MVVNRLKREQ CDRTKHDSSF SRWKILIGPS DWEDYSKEKE GSTRYRIHNL PQKLGPGVYE  60
LGVAVSRSNL GREIYKLSTD PRRIVVVYLG KADNVRARLQ RYGRNGAHLS NTCMSDDSSL  120
RTGRSLFQEI FSQGFPIVYR WAPMQNEGDA LRTESQLLST FDYAWNTISN GTRRPDDIHQ  180
MLNKLASGTR TFSDVAKLIL PFTQKKVGIP IKSSKLHLTD DKLDEADSGS YNVLSRVFKF  240
NRSRPRIVQD TTVGSATNEN AKICGVMLTD GSICKRPPVE KRVRCPEHKG MRINASTTKA  300
IRSPKSELES IVRNAYRYQN ASHDVEDPPQ RTVKCHVEEG ITKTIICGII LDDGSTCRRQ  360
PVKGRKRCQE HKGRRIRAN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g090060.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC147961	0.0	AC147961.3 Medicago truncatula chromosome 7 clone mth2-39i23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003625016.2	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	G7KQU4	0.0	G7KQU4_MEDTR; Putative transcription factor HRT family
STRING	AES81234	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9409	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-90	effector of transcription2

Link Out ? help Back to Top
Phytozome	Medtr7g090060.1
Entrez Gene	11419140

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]