PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g088070.2 | ||||||||
Common Name | MTR_7g088070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 276aa MW: 29937.3 Da PI: 6.1059 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.7 | 2.6e-33 | 50 | 104 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Medtr7g088070.2 50 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 104 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.06 | 47 | 107 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-32 | 50 | 105 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.4E-26 | 50 | 105 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 3.76E-17 | 50 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-7 | 52 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.5E-24 | 135 | 180 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MYHAKKFPEE TMMLHKSQGG GGGGGEQFAN GGGLNGSAVK NVQPAGGGGK QRLRWTSDLH 60 DRFVDAITQL GGPDRATPKG VLRVMGVPGL TIYHVKSHLQ KYRLAKYLPE SPDSKDEKRN 120 SGDSISGADS SPGLQINDAL RMQMEVQKRL HEQLEVQKQL QMRIEAQGKY LQKIIEEQQK 180 LGSTLAASET LPLSHDKQNQ PLSEPSGSSD ALADTFSPHK KQRIDEGSKD GTAPQVTIKT 240 AQKNDCNVGP LDPNLYEDDA GYGFDLETEN DDGNE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.12360 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g088070.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149134 | 0.0 | AC149134.2 Medicago truncatula clone mth2-19l15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003624830.2 | 0.0 | myb family transcription factor PHL7 isoform X2 | ||||
Swissprot | Q9SJW0 | 6e-70 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | G7L3R4 | 0.0 | G7L3R4_MEDTR; Myb-like transcription factor family protein | ||||
STRING | AES81047 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 2e-72 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g088070.2 |
Entrez Gene | 11435643 |
Publications ? help Back to Top | |||
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