PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr7g088070.1 | ||||||||
Common Name | MTR_7g088070 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 280aa MW: 30294.6 Da PI: 6.1073 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.7 | 2.6e-33 | 50 | 104 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Medtr7g088070.1 50 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 104 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.06 | 47 | 107 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.5E-26 | 50 | 105 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 3.94E-17 | 50 | 104 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.6E-32 | 50 | 105 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-7 | 52 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.6E-24 | 139 | 184 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 280 aa Download sequence Send to blast |
MYHAKKFPEE TMMLHKSQGG GGGGGEQFAN GGGLNGSAVK NVQPAGGGGK QRLRWTSDLH 60 DRFVDAITQL GGPDRATPKG VLRVMGVPGL TIYHVKSHLQ KYRLAKYLPE SPGDGKDSKD 120 EKRNSGDSIS GADSSPGLQI NDALRMQMEV QKRLHEQLEV QKQLQMRIEA QGKYLQKIIE 180 EQQKLGSTLA ASETLPLSHD KQNQPLSEPS GSSDALADTF SPHKKQRIDE GSKDGTAPQV 240 TIKTAQKNDC NVGPLDPNLY EDDAGYGFDL ETENDDGNE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-24 | 49 | 107 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.12360 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr7g088070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC149134 | 0.0 | AC149134.2 Medicago truncatula clone mth2-19l15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003624829.2 | 0.0 | myb family transcription factor PHL7 isoform X1 | ||||
Swissprot | Q9SJW0 | 1e-71 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | G7L3R3 | 0.0 | G7L3R3_MEDTR; Myb-like transcription factor family protein | ||||
STRING | AES81047 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13013 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01060.1 | 4e-74 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr7g088070.1 |
Entrez Gene | 11435643 |
Publications ? help Back to Top | |||
---|---|---|---|
|