PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g080020.1
Common NameMTR_7g080020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 774aa    MW: 85131 Da    PI: 6.6772
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g080020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.4e-32280336259
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ d++++ei+Y+g+Hnh 
  Medtr7g080020.1 280 EDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCQVKKKVERSH-DGHITEIIYKGNHNHA 336
                      7****************************************.***************7 PP
2WRKY101.64.7e-32492550159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver++++ k+v +tYeg+Hnhe
  Medtr7g080020.1 492 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHNLKYVLTTYEGKHNHE 550
                      59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.8E-28269338IPR003657WRKY domain
PROSITE profilePS5081123.904274338IPR003657WRKY domain
SuperFamilySSF1182905.1E-25276338IPR003657WRKY domain
SMARTSM007741.8E-35279337IPR003657WRKY domain
PfamPF031069.4E-25280335IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.5E-35477552IPR003657WRKY domain
SuperFamilySSF1182909.68E-28485552IPR003657WRKY domain
PROSITE profilePS5081137.275487552IPR003657WRKY domain
SMARTSM007741.8E-36492551IPR003657WRKY domain
PfamPF031063.5E-24493550IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MEQDNNNIKN NINNKNNLNK SGGDEINNFS DAKDRKFVDF SPKRSIAERR GFNKINAGLI  60
SFGATTPLVS PATRSPCLTI PPGISPTALL ESPIMLPNSQ AMPSPTTGSF AMLPPLTYKG  120
SMLTSVKHEQ ENVDVPTASD FAASFNFKHQ ANLDADSLSP YFASLNQVSN NRHMMNGGGH  180
RDGQMLVQGQ QLLDFSFPQG FSSEYLARNS GVHFYNDVKM VDDVIVNTNN VDIPISRSEE  240
ASDESTLPEN SIHSEDIGQH HVLEAEQKEM SHAAGAKTSE DGYNWRKYGQ KQVKGSEYPR  300
SYYKCTHSNC QVKKKVERSH DGHITEIIYK GNHNHAKPHS SRRGSVPSSD EISENAEANE  360
TCDRVDADSV WGNIQSWGKD AKHNPERKPD GQERTSPPSG VTELSDPMKR ARSQGMFESD  420
NAPEHSSALG NHDGDKDGAT QAVLSPENNP EDADSESKRR KKESYPVETM VPPRAVREPR  480
VVVQIESDID ILDDGYRWRK YGQKVVKGNP NPRSYYKCTS AGCTVRKHVE RASHNLKYVL  540
TTYEGKHNHE VPAARNNNHI SSSDVGLSST CANVIPGSAV IPKSETHQTL PSHFDRKPEF  600
SNDFLRSSLM GNFSNDMKFG PSSISQMNYS SLNNIIPYGA YGTSPDHVAV PQTGPIASMF  660
PEFQMPLPLN LPSSGNYALA GINFNYARPM SSIQSYLSGQ QLRDMDTGFL RPKQEVKEES  720
SYAACAPSLD HASTSHTPPY AACAPSLDHA STSHTPPSPS QSIYQCVMQN FPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-32280553878Probable WRKY transcription factor 4
2lex_A1e-32280553878Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g080020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1481710.0AC148171.16 Medicago truncatula clone mth2-30a2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625864.10.0probable WRKY transcription factor 33
RefseqXP_024625865.10.0probable WRKY transcription factor 33
TrEMBLG7KRI30.0G7KRI3_MEDTR; WRKY family transcription factor
STRINGAES803920.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-79WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]