PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g076740.1
Common NameMTR_7g076740
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 305aa    MW: 34084.1 Da    PI: 8.145
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g076740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.41.1e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l++++k+ Gg+ +W++ ++  g+ R++k+c++rw +yl
  Medtr7g076740.1 14 KGPWTAEEDEILANYIKKNGGHgSWRSLPKITGLLRCGKSCRLRWTNYL 62
                     79*******************9***********99************97 PP
2Myb_DNA-binding57.53.1e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++l +++++ lG++ W++Ia+ ++ gRt++++k++w+++l
  Medtr7g076740.1  68 RGPFTPEEEKLVIQLHAILGNR-WAAIASQLP-GRTDNEIKNFWNTHL 113
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.663962IPR017930Myb domain
SuperFamilySSF466899.71E-2911109IPR009057Homeodomain-like
SMARTSM007171.8E-111364IPR001005SANT/Myb domain
PfamPF002498.5E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-211569IPR009057Homeodomain-like
CDDcd001671.71E-81662No hitNo description
PROSITE profilePS5129427.12163117IPR017930Myb domain
SMARTSM007172.6E-1867115IPR001005SANT/Myb domain
PfamPF002493.0E-1768113IPR001005SANT/Myb domain
CDDcd001671.71E-1370113No hitNo description
Gene3DG3DSA:1.10.10.606.8E-2870118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRTPCCDKK GLKKGPWTAE EDEILANYIK KNGGHGSWRS LPKITGLLRC GKSCRLRWTN  60
YLRPDIKRGP FTPEEEKLVI QLHAILGNRW AAIASQLPGR TDNEIKNFWN THLKKRLKSL  120
GIDPKTHEPV ASLTSYPNHK SHASVSTRHM AQWESARLEA EARLSIESSH FNNNPNSFTK  180
TDSSSDYFLR IWNSEVGDAF RKVQKPDTDH INIITSCSQS PISAGSLSSN KCDSISAVTA  240
SNSIVKEELD WRNYKFSAED VLLESDSSSS NDLQDSSDTA LQLLFDFPMN NDMSFLGNSF  300
ASPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27121175108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118LKKRLKS
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g076740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1238990.0AC123899.15 Medicago truncatula clone mth2-33n6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623894.10.0transcription factor MYB41
SwissprotQ9M2D91e-114MYB17_ARATH; Transcription factor MYB17
TrEMBLG7L3J20.0G7L3J2_MEDTR; Myb transcription factor MIXTA-like protein
STRINGAES801120.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-111myb domain protein 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]