PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g075230.1 | ||||||||
Common Name | MTR_7g075230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 21929.8 Da PI: 7.0296 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.5 | 1.4e-35 | 12 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakd.Cvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk+lrrkC+k+ C++apyf ++ +++fa+vhk+FGasn kll+++p ++r da+ +l+yeA ara dPvyG+v+++++lqqq+ +l+ Medtr7g075230.1 12 PCGACKFLRRKCVKGcCIFAPYFESSGqgSAHFAAVHKVFGASNAAKLLTRIPVHKRLDAVVTLCYEALARATDPVYGCVAHLFALQQQVVELQ 105 7*************9789*****7744257**************************************************************** PP DUF260 92 aelallkee 100 aela+++++ Medtr7g075230.1 106 AELAYVQAR 114 *****9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.147 | 11 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-35 | 12 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MDLGCGDEGG GPCGACKFLR RKCVKGCCIF APYFESSGQG SAHFAAVHKV FGASNAAKLL 60 TRIPVHKRLD AVVTLCYEAL ARATDPVYGC VAHLFALQQQ VVELQAELAY VQARLSILNR 120 ISEDPQFQQP QSSSISPTLQ SSLLHHFSSN NETSYMSMHF GHPLQNQYHP TPFENPSYYS 180 YNQQLHDQEF QALPREF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-32 | 9 | 108 | 8 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-32 | 9 | 108 | 8 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems and flowers. {ECO:0000269|PubMed:12068116}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots, roots and floral tissues, but not in stems or leaves. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g075230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003623743.1 | 1e-146 | LOB domain-containing protein 19 | ||||
Swissprot | O22132 | 6e-52 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 2e-51 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | G7L0B7 | 1e-145 | G7L0B7_MEDTR; LOB domain protein | ||||
STRING | AES79961 | 1e-145 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 2e-42 | LOB domain-containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g075230.1 |
Entrez Gene | 11426685 |
Publications ? help Back to Top | |||
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