PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g069740.1
Common NameMTR_7g069740
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 586aa    MW: 67022.3 Da    PI: 4.4554
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g069740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS94.22e-292245848374
             GRAS   8 cAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                        ea+++g+ +la+  L+ +s+   +p gd+++ la+y+++   ++           l+ +       ++  aa+k+f++   + k++h+ a +
  Medtr7g069740.1 224 HGEALEKGQRALAEVNLKCISQKvTTPIGDSLETLAFYLAQEVTNHGEY--------LKGE-----AYKNFQAAFKVFYQGNLVGKIAHFSAIS 304
                      56899999*************99889999*********66554444333........2222.....356778899******************* PP

             GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                       Ilea+  e  +++HiiD+ +++G+QWp Ll+a ++      +l++T ++ ++++  +  + e t++ L ++A+++g+ ++ +    k+le+l 
  Medtr7g069740.1 305 SILEAAMLEdcDEIHIIDYCLGNGVQWPFLLEAVSKM---NKRLKLTSIKWSDENseRVWNFEDTKRELYEYAKSCGLILKVEE---KELEQL- 391
                      ****97655459**********************986...457******98777655677899****************99887...899999. PP

             GRAS 191 leeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk.....vvvvveqe..adh.nsesFlerflealeyysalfdsl 271
                       +eL++ +     +E la nl+  l ++   +   + +  e+Lk+  +l  +     ++++ + +   ++ ns +F+  f   l +y al++s+
  Medtr7g069740.1 392 SSELKIMNetggkKEFLAFNLMTGLPHMGMVRRRRK-HAYEFLKVAEDLIKNygikgIITFGDGDafEKLkNSLNFMSFFEGNLVHYKALLESI 484
                      6778888778999***************95555555.599****99988654444459*****99532447*********************** PP

             GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgW 362
                      e++++++  e+ri  E  ++++ i+++   ++ e   ++++ +  +   +e      +ls+++ ++++ +lr  + s   r+e e++++lvl W
  Medtr7g069740.1 485 ESQFSTKFsEARIACEVLFVAPCISSLDWLQTWE---EMKSDGYVK---DEISIDGGRLSKNVLMEVREMLRGSDsSYQARIEgENENQLVLEW 572
                      9999877548888899888888888877766666...444333333...556677789*****************6666777788899****** PP

             GRAS 363 kdrpLvsvSaWr 374
                      k+ +L+ +S W+
  Medtr7g069740.1 573 KGSQLLRFSIWK 584
                      ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.409191562IPR005202Transcription factor GRAS
PfamPF035146.8E-27224584IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MSQQEILHTP WPLIYEHMDS STFDHHHHHQ VIEPYSFTMV DHVDDYDPYG IIMDDHVDVD  60
YVPYGIIMDD HVEYDYEFNT LLSTSENSTL SEISIFTNDH IQFPIDEETL ELPSLMELDS  120
ILSPQTGNIH EQEYYQEESE GSFPSQNFPH NLEGQISNPL GDSCKMAASA TYDHFPSQNS  180
PCDAWSPTLS MKSDFSSIQQ SLTLPQENME IENQVSLPHL MEAHGEALEK GQRALAEVNL  240
KCISQKVTTP IGDSLETLAF YLAQEVTNHG EYLKGEAYKN FQAAFKVFYQ GNLVGKIAHF  300
SAISSILEAA MLEDCDEIHI IDYCLGNGVQ WPFLLEAVSK MNKRLKLTSI KWSDENSERV  360
WNFEDTKREL YEYAKSCGLI LKVEEKELEQ LSSELKIMNE TGGKKEFLAF NLMTGLPHMG  420
MVRRRRKHAY EFLKVAEDLI KNYGIKGIIT FGDGDAFEKL KNSLNFMSFF EGNLVHYKAL  480
LESIESQFST KFSEARIACE VLFVAPCISS LDWLQTWEEM KSDGYVKDEI SIDGGRLSKN  540
VLMEVREMLR GSDSSYQARI EGENENQLVL EWKGSQLLRF SIWKN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g069740.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465540.0AC146554.5 Medicago truncatula clone mth2-9l7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623338.10.0nodulation-signaling pathway 2 protein-like
TrEMBLG7KSD50.0G7KSD5_MEDTR; GRAS family transcription factor
STRINGAES795560.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.19e-11GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]