PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr7g068770.1

Common Name

MTR_7g068770

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Trihelix

Protein Properties

Length: 294aa MW: 35338.7 Da PI: 7.1171

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr7g068770.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.9	1.8e-25	52	134	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ qe+++ + +r+e+++++ ++k++k+lWe +s+ m+e+g++rs++qCk+kw+nl +ryk ++++e + ++++p++++l+ Medtr7g068770.1 52 QWSIQETKEFLMIRSELDQTFMETKRNKQLWEVISNTMKEKGYHRSAEQCKCKWKNLVTRYKGCETMEVEA---MRQQFPFYNELQ 134 7******************************************************************85...56689***98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	6.09E-22	51	116	No hit	No description
Pfam	PF13837	3.6E-21	52	136	No hit	No description
PROSITE profile	PS50090	7.306	53	109	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MEGHHLQHHQ QHQHQQHQQH HQQHQQRQHQ QHAHNIIGTS SVNVDVTDRF PQWSIQETKE 60 FLMIRSELDQ TFMETKRNKQ LWEVISNTMK EKGYHRSAEQ CKCKWKNLVT RYKGCETMEV 120 EAMRQQFPFY NELQAIFSAR MQRMLWAEAE GGSKKKGVHV SSEDEEELGN EESEGDHKGN 180 IKKKKKKGKM IIGGGGNDNN GSNNLKEILE EFMRQQMQME AQWMEAFEAR ENERRLKEME 240 WRQRMEALEN ERIMMEQRWR EREEQRRIRE EARAEKRDEL ITALLDKLTR EDM*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.18557	0.0	root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269\|PubMed:15310827}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr7g068770.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269\|PubMed:15310827}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	8e-62	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013449157.1	0.0	trihelix transcription factor GT-3b
Swissprot	O80450	1e-73	TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBL	A0A072U082	0.0	A0A072U082_MEDTR; Putative transcription factor MYB family
STRING	XP_004514215.1	1e-141	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	1e-53	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Medtr7g068770.1
Entrez Gene	25498766

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]