PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g068600.1
Common NameMTR_7g068600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 239aa    MW: 26660.6 Da    PI: 10.4818
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g068600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like863.8e-271370155
          G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQkYRl 55
                     k+rlrWt++LH+ Fveav++LGG+++AtPk i   +++m+v  L + hvkSHLQkYR+
  Medtr7g068600.1 13 KERLRWTQQLHDLFVEAVNRLGGADRATPKGIlkgMKAMGVSELKILHVKSHLQKYRI 70
                     68******************************3333567788899************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-251171IPR009057Homeodomain-like
SuperFamilySSF466891.97E-131270IPR009057Homeodomain-like
TIGRFAMsTIGR015575.5E-211371IPR006447Myb domain, plants
PfamPF002492.8E-61569IPR001005SANT/Myb domain
PfamPF143791.4E-13102141IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGSTRSDGSA THKERLRWTQ QLHDLFVEAV NRLGGADRAT PKGILKGMKA MGVSELKILH  60
VKSHLQKYRI SKLIPESTTR GKIEKRSISD ILPNFCSISA LQLKEVLQMQ AEVQNRMSDK  120
VEVPKSLKLK IEAQGKYLAR IGQSNQIRTI TRKACKPFVG KATPLPSLSE ESESFKTQSD  180
EEHRTAKKKK VTNENVFPTG FELGSSTTSE FSNQTWNLSW SQLAEATYQS PLVPSFLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-191372157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-191372157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-191372157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-191372157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.47960.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g068600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0922234e-97BT092223.1 Soybean clone JCVI-FLGm-10K14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449146.11e-177myb family transcription factor PHL7
TrEMBLA0A072U1W81e-175A0A072U1W8_MEDTR; Myb-like transcription factor family protein
STRINGXP_004514212.11e-141(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106592535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-42G2-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]