PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g061330.2 | ||||||||
Common Name | MTR_7g061330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 531aa MW: 59080.5 Da PI: 9.3918 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.3e-15 | 25 | 71 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia+ + R++ qc +rwqk+l Medtr7g061330.2 25 KGGWTAEEDETLRNAVAAFKGKHWKKIAEFFA-DRSEVQCLHRWQKVL 71 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 63.4 | 4.3e-20 | 77 | 123 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++v++v+++G+ W++Ia+ ++ gR +kqc++rw+++l Medtr7g061330.2 77 KGPWTQEEDDKIVELVAKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 123 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 54.8 | 2.2e-17 | 129 | 172 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ Medtr7g061330.2 129 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 172 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.878 | 20 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-13 | 24 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-13 | 25 | 71 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.3E-14 | 26 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-20 | 27 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.37E-11 | 28 | 71 | No hit | No description |
PROSITE profile | PS51294 | 33.325 | 72 | 127 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.99E-32 | 74 | 170 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-18 | 76 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-19 | 77 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-28 | 79 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.88E-16 | 79 | 123 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 127 | 178 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-16 | 128 | 176 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.62 | 128 | 178 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.7E-15 | 129 | 172 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.21E-12 | 131 | 174 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 531 aa Download sequence Send to blast |
MWRSCTDLHR ICLYRRTTGP IRRAKGGWTA EEDETLRNAV AAFKGKHWKK IAEFFADRSE 60 VQCLHRWQKV LNPELVKGPW TQEEDDKIVE LVAKYGPTKW SLIAKSLPGR IGKQCRERWH 120 NHLNPDIKKD AWTLEEELAL MNAHRIHGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLDF 180 YLATGKLPPI PKSNPLVAAK DTIKRSASKT ILVSSNKELN VAVEASSETT AISKPDDSGK 240 IQFESSGTAR EVGDSSSLPA NESADSDCVE GKPGPSNVDL SCGNSEHISR ANFGTTYGPK 300 YENSALNGNS ITEHCLNNGK MRNSSSGLIR TSTQENQTCG SLCYEPPLLA GSVPLDSLHL 360 SILCMQNDYC SKLSPIGYTT PPRARVSELC TETPESILRK AANTYPNTPS IFRRRRTGVQ 420 PLTSPSKVLK VDNDSHASNE PYRTKNNSDS EAQTLSESPA SRDNNKAFNA SPPYRLRTKR 480 TAVVKSVEKQ LEFAFDKEKN DDNMSAMEKS TKRSNVMTED RLHERKLVAT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-68 | 24 | 178 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-68 | 24 | 178 | 5 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.22370 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00482 | DAP | Transfer from AT5G02320 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g061330.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT053144 | 0.0 | BT053144.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-A-18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003623113.1 | 0.0 | transcription factor MYB3R-3 | ||||
Refseq | XP_013448854.1 | 0.0 | transcription factor MYB3R-3 | ||||
Swissprot | Q6R032 | 1e-137 | MB3R5_ARATH; Transcription factor MYB3R-5 | ||||
TrEMBL | A0A072TZQ0 | 0.0 | A0A072TZQ0_MEDTR; Myb transcription factor | ||||
STRING | AES79331 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-139 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g061330.2 |
Entrez Gene | 11415521 |
Publications ? help Back to Top | |||
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