PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g061330.1
Common NameMTR_7g061330, MTR_7g461410
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 567aa    MW: 62466 Da    PI: 8.6194
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g061330.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.6e-1561107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av+ + g++Wk+Ia+ +   R++ qc +rwqk+l
  Medtr7g061330.1  61 KGGWTAEEDETLRNAVAAFKGKHWKKIAEFFA-DRSEVQCLHRWQKVL 107
                      688*****************************.************986 PP
2Myb_DNA-binding63.34.7e-20113159148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++v++v+++G+  W++Ia+ ++ gR +kqc++rw+++l
  Medtr7g061330.1 113 KGPWTQEEDDKIVELVAKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 159
                      79******************************.*************97 PP
3Myb_DNA-binding54.62.4e-17165208146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
  Medtr7g061330.1 165 KDAWTLEEELALMNAHRIHGNK-WAEIAKVLP-GRTDNAIKNHWNS 208
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.87856107IPR017930Myb domain
SMARTSM007171.2E-1360109IPR001005SANT/Myb domain
PfamPF002494.2E-1361107IPR001005SANT/Myb domain
SuperFamilySSF466892.44E-1462117IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-2063114IPR009057Homeodomain-like
CDDcd001677.59E-1264107No hitNo description
PROSITE profilePS5129433.325108163IPR017930Myb domain
SuperFamilySSF466896.74E-32110206IPR009057Homeodomain-like
SMARTSM007171.1E-18112161IPR001005SANT/Myb domain
PfamPF002493.7E-19113159IPR001005SANT/Myb domain
CDDcd001672.32E-16115159No hitNo description
Gene3DG3DSA:1.10.10.602.6E-28115162IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-23163214IPR009057Homeodomain-like
PROSITE profilePS5129422.62164214IPR017930Myb domain
SMARTSM007172.6E-16164212IPR001005SANT/Myb domain
PfamPF002491.9E-15165208IPR001005SANT/Myb domain
CDDcd001672.13E-12167210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MDEFESEVCC LENKQSTVAS CSSVSEGSDS IIQKSPGICS PTATSTSPSH RRTTGPIRRA  60
KGGWTAEEDE TLRNAVAAFK GKHWKKIAEF FADRSEVQCL HRWQKVLNPE LVKGPWTQEE  120
DDKIVELVAK YGPTKWSLIA KSLPGRIGKQ CRERWHNHLN PDIKKDAWTL EEELALMNAH  180
RIHGNKWAEI AKVLPGRTDN AIKNHWNSSL KKKLDFYLAT GKLPPIPKSN PLVAAKDTIK  240
RSASKTILVS SNKELNVAVE ASSETTAISK PDDSGKIQFE SSGTAREVGD SSSLPANESA  300
DSDCVEGKPG PSNVDLSCGN SEHISRANFG TTYGPKYENS ALNGNSITEH CLNNGKMRNS  360
SSGLIRTSTQ ENQTCGSLCY EPPLLAGSVP LDSLHLSILC MQNDYCSKLS PIGYTTPPRA  420
RVSELCTETP ESILRKAANT YPNTPSIFRR RRTGVQPLTS PSKVLKVDND SHASNEPYRT  480
KNNSDSEAQT LSESPASRDN NKAFNASPPY RLRTKRTAVV KSVEKQLEFA FDKEKNDDNM  540
SAMEKSTKRS NVMTEDRLHE RKLVAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-68602145159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-68602145159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.223700.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed both in proliferating and maturing stages of leaves. {ECO:0000269|PubMed:26069325}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g061330.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0531440.0BT053144.1 Medicago truncatula clone MTYFL_FM_FN_FO1G-A-18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003623113.10.0transcription factor MYB3R-3
RefseqXP_013448854.10.0transcription factor MYB3R-3
SwissprotQ6R0321e-152MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLG7L4J70.0G7L4J7_MEDTR; Myb transcription factor
STRINGAES793310.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66163449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-155myb domain protein 3r-5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  4. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]