PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr7g060630.1 | ||||||||
Common Name | MTR_7g060630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WOX | ||||||||
Protein Properties | Length: 207aa MW: 23876.8 Da PI: 9.1828 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.5 | 6.1e-20 | 7 | 66 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +Leel+++ r+psa ++++++++l +++ ++V++WFqN++a++++ Medtr7g060630.1 7 SRWSPTTEQLMILEELYRSgIRTPSAVQIQQITTHLsfygRIEGKNVFYWFQNHKARDRQ 66 7*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 117.4 | 6.5e-38 | 6 | 67 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+Pt+eQ++iLeely+sG+rtP++ +iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqk Medtr7g060630.1 6 SSRWSPTTEQLMILEELYRSGIRTPSAVQIQQITTHLSFYGRIEGKNVFYWFQNHKARDRQK 67 79***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.301 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.9E-4 | 4 | 71 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-8 | 7 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.64E-11 | 7 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-17 | 7 | 66 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00116 | 8 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008283 | Biological Process | cell proliferation | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0009943 | Biological Process | adaxial/abaxial axis specification | ||||
GO:0009947 | Biological Process | centrolateral axis specification | ||||
GO:0010865 | Biological Process | stipule development | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSPPGSSRWS PTTEQLMILE ELYRSGIRTP SAVQIQQITT HLSFYGRIEG KNVFYWFQNH 60 KARDRQKLRR KLNKQLQLQQ QQQQQQQQQL HVHHCQLNHN NMISNHFVGS TFGYPFGSNA 120 QDFSFFNSPS LLFEGSVSAN TSEGEINCKW NGYNNQQSLM EKKDIAFSNY GWTTLMDNVN 180 HEAPSCCTKP LKTLDLFPLT TTRIKD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr7g060630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM016910 | 0.0 | KM016910.1 Medicago truncatula LOOSE-FLOWER (LOOSE-FLOWER) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003623058.1 | 1e-155 | WUSCHEL-related homeobox 3 | ||||
TrEMBL | G7L3H0 | 1e-153 | G7L3H0_MEDTR; Putative transcription factor Homobox-WOX family | ||||
STRING | AES79276 | 1e-154 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10632 | 29 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 3e-36 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr7g060630.1 |
Entrez Gene | 11410919 |
Publications ? help Back to Top | |||
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