PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g059330.1
Common NameMTR_7g059330
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 771aa    MW: 85207.3 Da    PI: 5.968
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g059330.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.64.1e-22625721295
                      EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                      +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ +t+ed  ++r+W+++++y  ++ks++y+l+ ++ +FvkangL+egDf+v++  ++ ++
  Medtr7g059330.1 625 QKVLKQSDVGSLGRIVLPKKEAETHlpELEARDGISITMEDiGTSRVWNMRYRYwpNNKSRMYLLE-NTGDFVKANGLQEGDFIVIY--SDvKC 715
                      79*************************999999********7778*********777777777777.********************..55589 PP

                      E..EEE CS
               B3  90 felvvk 95 
                      ++++++
  Medtr7g059330.1 716 GKFMIR 721
                      977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-29619732IPR015300DNA-binding pseudobarrel domain
CDDcd100158.12E-37622723No hitNo description
SuperFamilySSF1019365.89E-24623719IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.4E-22624724IPR003340B3 DNA binding domain
PROSITE profilePS5086311.378624726IPR003340B3 DNA binding domain
PfamPF023622.2E-18625721IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MECGLDLHAK LVNETEQVGF GNLAEENWLN NTTNDQDGDL LGMNMNDDAS MFYADFPPLP  60
DFPCMSSSSS SSSSSTPLKT IACTSTTTTT TSSSSSASSS SAASWAVLKS DVEVDHQGYQ  120
KHGHPLDYHH GHPPTTLSST ASMEISQQQQ QDLGVSNNDV VVGGGDCMDD VNIMDTFGYM  180
ELLEANEFFD PASIFQNEDE NPLVDFTQEQ QVQVQDGYQQ HQQVPMIVHD DRENKPQQVN  240
IEENNDDVFV CDGVNGEESI QGDELGACDG VSDEMSMVFL EWLKSNKDSV SANDLRNVKL  300
KKSTIESAAR RLGGGKEGMK QLLKLILEWV QTSHLHNKRL KENANTNTII PSNIVPQQHH  360
FQDPCQNQNT ANTFAPESNA CFNQTSWLDQ TPLIVPPQQF SQPMVGVGVG FVADPYTNGS  420
VSNNINPYQP AVTNEYHMLE SNHSWGASQF NVAPNYNQSF VENNNNVLQP HGMNFGGYGN  480
QYNSYQLFPG PGDRLMRLGP SATKEARKKR MARQRRFMSH HRHHNINHHQ NIQGSDPLAR  540
LGSGDSCTNV AAGGSHANPA NWMYWQTMTG GTAASLAPVV PAEPTQPPVD RDRPTMQTQS  600
SHQGRSASDR RQGWKPEKNL RFLLQKVLKQ SDVGSLGRIV LPKKEAETHL PELEARDGIS  660
ITMEDIGTSR VWNMRYRYWP NNKSRMYLLE NTGDFVKANG LQEGDFIVIY SDVKCGKFMI  720
RGVKVRQQGT KPEAKKAGKS QKNQHGNNAA NLAGTAVDNN GTPSSPKRKK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-386207281109B3 domain-containing transcription factor FUS3
6j9b_D3e-386207281109B3 domain-containing transcription factor FUS3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.146110.0seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g059330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0263750.0EU026375.1 Pisum sativum clone 1 ABI3-like factor (ABI3) mRNA, complete cds, alternatively spliced.
GenBankEU0263760.0EU026376.1 Pisum sativum clone 2 ABI3-like factor (ABI3) mRNA, complete cds, alternatively spliced.
GenBankEU0263770.0EU026377.1 Pisum sativum clone 3 ABI3-like factor (ABI3) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024625356.10.0B3 domain-containing transcription factor ABI3
TrEMBLA0A072U0Z80.0A0A072U0Z8_MEDTR; B3 domain transcription factor
STRINGXP_004515628.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94483037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-148B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]