PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr7g035075.1
Common NameMTR_7g035075
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 209aa    MW: 23806.6 Da    PI: 6.5122
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr7g035075.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Medtr7g035075.1 16 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding57.53.2e-1869112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l++++++++G++ W++Ia++++ gRt++++k++w++
  Medtr7g035075.1  69 RGNITPEEQLLIIELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 112
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.2E-24966IPR009057Homeodomain-like
PROSITE profilePS5129417.4421163IPR017930Myb domain
SuperFamilySSF466896.36E-3113110IPR009057Homeodomain-like
SMARTSM007178.1E-131565IPR001005SANT/Myb domain
PfamPF002491.5E-161663IPR001005SANT/Myb domain
CDDcd001671.30E-101863No hitNo description
PROSITE profilePS5129426.18364118IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-2567118IPR009057Homeodomain-like
SMARTSM007171.3E-1668116IPR001005SANT/Myb domain
PfamPF002495.2E-1769112IPR001005SANT/Myb domain
CDDcd001671.49E-1373112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDKKECSSSQ DPDVRKGPWT MEEDLILINY IANHGEGVWN SLAKSAGLKR TGKSCRLRWL  60
NYLRPDVRRG NITPEEQLLI IELHAKWGNR WSKIAKHLPG RTDNEIKNYW RTRIQKHIKQ  120
AENSQSQEQG SDIQINDDNN NNQLIGSTSQ ISNIAEPMDT NIISPPSYQG ILEPFPPHHQ  180
FPTISDQSGC SNYWSMEDLL SLQLLNGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121183108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.73460.0flower| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr7g035075.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013448224.11e-153myb-related protein 305
SwissprotP813914e-89MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A072TYI71e-152A0A072TYI7_MEDTR; Myb transcription factor
STRINGGLYMA05G08690.11e-107(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-82myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]