PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g092520.1 | ||||||||
Common Name | MTR_6g092520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HRT-like | ||||||||
Protein Properties | Length: 369aa MW: 41596.3 Da PI: 9.7897 | ||||||||
Description | HRT-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HRT-like | 60.8 | 2.1e-19 | 258 | 288 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGvil+dGs+C+++Pv++R RC+eHKGmRi Medtr6g092520.1 258 ICGVILDDGSICTKTPVEKRVRCHEHKGMRI 288 8*****************************7 PP | |||||||
2 | HRT-like | 58.6 | 1e-18 | 331 | 361 | 1 | 31 |
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CG+iledG++C+rqPvkgRKRC+ HKG+Ri Medtr6g092520.1 331 TCGIILEDGTTCRRQPVKGRKRCHDHKGKRI 361 7*****************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MLKREQCDYT KHDSSFSHWK ILIGPSDWED YSKGKEGSTR YRIHNLPENS GPGVYELGVA 60 ASTSGLGREI YKLSTDSCRV VVVYLGKGDN VRTRLQCYGR NGAHLGNGCS SFESSHQKGH 120 SLFHEIFLQG FPIVYRWASM QTKGDALQTE SQLLSTFDYA WNTINNGPRR PGDILEMLNK 180 ISSDTRTFSD VAKSLLPFTQ KKVGIPIKSS MLPVKDNKSN EVDSGNYNFL SRVFKFNRSR 240 PKIVQDKADF SVEKKDKICG VILDDGSICT KTPVEKRVRC HEHKGMRIRT AKSESKRGNA 300 CRYQNIKHDV EDLPQTVVES LVDESITKTI TCGIILEDGT TCRRQPVKGR KRCHDHKGKR 360 IRAFVPIN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g092520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC166146 | 0.0 | AC166146.18 Medicago truncatula clone mth2-174g5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003620925.1 | 0.0 | protein EFFECTOR OF TRANSCRIPTION 2 | ||||
TrEMBL | G7KJT8 | 0.0 | G7KJT8_MEDTR; Effector of transcription protein | ||||
STRING | AES77143 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9409 | 31 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56780.1 | 3e-87 | effector of transcription2 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g092520.1 |
Entrez Gene | 11436498 |
Publications ? help Back to Top | |||
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