PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g092480.1
Common NameMTR_6g092480
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HRT-like
Protein Properties Length: 670aa    MW: 75420.7 Da    PI: 5.4378
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g092480.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like34.53.5e-11310333730
         HRT-like   7 edGsvCkrqPvkgRKRCeeHKGmR 30 
                      +dGs+C+++P+++R  C+eHKGmR
  Medtr6g092480.1 310 NDGSICTKPPAEKRVSCQEHKGMR 333
                      6*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MICVILQYSL FHEIIFQGFP IVYRWASMKT DGEACKVKSQ MLETFDYAWN KVDNGKRRPN  60
DILQMLNIIS SNKLPITNDK LDEAGNNSSF VDESITKNDV GKAKVALEVE VNHQLVDDKL  120
DEAENNSSFV DESITKNDIG TSEVALEAEV NHQLVDDNLD EAKNNSSFVD ESITKIDVGM  180
SEVVLEVELD HQLADDKSDE AKNNISFVDE SVIKNDVGTS EVVLKVEVDH QLAEDKSDEA  240
ENNSCFVDES ITKNDFGTSE VALEVVVDHQ LADDKSDKVT LEAEVDHQLA EASPLKKKGK  300
SDKGETTKKN DGSICTKPPA EKRVSCQEHK GMRLNVFSAK AIRRSKSESE ILAGSFVDES  360
ITKNDDGTYA VVLQAKIDHQ LVEACPLKKK GKSDKGEANK KNVECVLEVE IGGSLWNRNF  420
DRAGFVKDHF NLYEDFEATR KSNHSNMFHD ASVSCLRSVV LLEVMEEKFQ AVKSNADRLK  480
QENEDLKLRV KTLEDQLKES RNSLKTTKDE KKKVEEDKRD VEAKCLELNN NYGAIKGEVK  540
KDVQKIIEFQ EGVENAKKGW LRIWKRGKLR SHVGKYYEVS SLQKGSLTGC FPSKESDCSG  600
KEQSREKKDK DTSSYPGSFH NTEVVQSPLH FQGDFTIITK ITTAQYFLSM RLHKKMLKHT  660
RKSLPMLKH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386392LKKKGKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.125891e-105flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g092480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1661460.0AC166146.18 Medicago truncatula clone mth2-174g5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024641299.10.0uncharacterized protein LOC11436497
TrEMBLG7KJT60.0G7KJT6_MEDTR; Uncharacterized protein
STRINGAES771410.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.13e-11effector of transcription2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]