PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g090405.1 | ||||||||
Common Name | MTR_6g090405 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 256aa MW: 28665.9 Da PI: 5.6227 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.7e-14 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd++l++++++ G+ +W + + + g++R++k+c++rw++yl Medtr6g090405.1 14 RGPWSNEEDDILKHYIQENGNAgNWISLPLKAGLNRCGKSCRLRWLNYL 62 89******************99*************************97 PP | |||||||
2 | Myb_DNA-binding | 41.4 | 3.2e-13 | 71 | 111 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T+eEd ++ ++ G++ W+ Ia+ ++ gRt++++k++w++ Medtr6g090405.1 71 FTKEEDNIICTLFSTIGSR-WSFIAAQLP-GRTDNDVKNHWNT 111 9******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.548 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-13 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-21 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.60E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 20.023 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-12 | 70 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-22 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.30E-9 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGRAPCCDKS KVKRGPWSNE EDDILKHYIQ ENGNAGNWIS LPLKAGLNRC GKSCRLRWLN 60 YLRPNIKLGG FTKEEDNIIC TLFSTIGSRW SFIAAQLPGR TDNDVKNHWN TKLKKKYVAG 120 NSSTSSTIYT FNNTTSSDHF SSTLTFQPQL EAPFVFDQKP NTPCFDSYNF LDLHETPISN 180 IPLPIKMESE AFYTGSSLSS SCSTTPTTKE ISSFSSAPFL EEQNNDNQCF EYDHDDAILL 240 EMFLDDLLNH GPSSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 14 | 116 | 7 | 107 | B-MYB |
1h8a_C | 2e-23 | 14 | 116 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g090405.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013453206.1 | 0.0 | transcription factor MYB87 | ||||
TrEMBL | A0A072UBN7 | 0.0 | A0A072UBN7_MEDTR; Myb transcription factor | ||||
STRING | XP_004503043.1 | 1e-110 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 9e-66 | myb domain protein 84 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g090405.1 |
Entrez Gene | 25496996 |
Publications ? help Back to Top | |||
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