PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr6g035315.1
Common NameMTR_6g035315
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 527aa    MW: 59762.7 Da    PI: 6.4799
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr6g035315.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.46.2e-26119215185
         trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                      +Wt+++v++Li+a+++++e+ +++            +kk++W+++sk+m+erg+++sp+qC++k+++lnkryk+++++ +++ +++++++ +++
  Medtr6g035315.1 119 KWTDKMVRLLITAVSYIGEDGSSEGgsggrrkfavlQKKGKWKSISKVMAERGYRVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCQVVENPALL 212
                      7*****************999975445677788899**********************************************569999888887 PP

         trihelix  83 dql 85 
                      d +
  Medtr6g035315.1 213 DVI 215
                      765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-23117242No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEGNLSQGGI VQGGGGSFGG FDLPGSMRVH RQGQHPHTMN QHQAHPCQGP AVHSSINEGF  60
PLTMGTLKNC DQTMSMNEFS QGDRNKHSGS EEDEPEEGGD GHHQEGSRGK KGSPWQRVKW  120
TDKMVRLLIT AVSYIGEDGS SEGGSGGRRK FAVLQKKGKW KSISKVMAER GYRVSPQQCE  180
DKFNDLNKRY KRLNDMLGRG TSCQVVENPA LLDVIEYLNE KEKDDVRKIL NSKHLFYEEM  240
CSYHNCNRLH LPHDPALQRS LQIALRNRDD HDNDDVRRSY HDDHDEDDHD METDDHDEFE  300
ENYASHGDSR VIFGGLGGTP KRLRQGQGHE DATTFGNSFN CQDYHKSPYP HGQMVQPDGN  360
HALPENMKAA WLQKQWIESR SVQLEEQKLQ IQVEMMELEK QKFKWERFSK KKDRELEKFK  420
LENDRMKIEN ERIALELKRK EIGGTIYSFD GETDEGMVVH DTSASIQGLG GPMTRARTKK  480
AKEALTQLVA KVLESKPTLE SMEDKMVMCI KPLEEGWGAS LAAHFI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.255750.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr6g035315.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024641615.10.0uncharacterized protein LOC25496105
TrEMBLA0A072U9Y90.0A0A072U9Y9_MEDTR; Transcription factor
STRINGAES850660.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-142sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]