PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g032830.1 | ||||||||
Common Name | MTR_6g032830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | GATA | ||||||||
Protein Properties | Length: 262aa MW: 29537.3 Da PI: 8.4729 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.8 | 5.2e-17 | 194 | 228 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + Tp+WR gp g+ktLCnaCG++y++ +l Medtr6g032830.1 194 CTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 228 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 9.6E-14 | 188 | 242 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.213 | 188 | 224 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.14E-14 | 191 | 251 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-13 | 192 | 226 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.31E-12 | 193 | 240 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 194 | 219 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.5E-15 | 194 | 228 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MDICNNVSVS EEFQQEFSTI DDLFPAHNTE VDLGMEWLSV FVEECFSSKP SCVIAPSSNV 60 QIQESTNTKP SNTMQKPQQQ NQSYLQNFVV PGKARSKRKR LSAPSTNIWS HSHLISDGNL 120 ISDPPLLKQA YWLADSELIA PKNEQKVSAV AYGDQKEAKR RVKKESYEVG IIQVKNSENV 180 NDDDEEHIPN ARRCTHCLSQ RTPQWRAGPL GPKTLCNACG VRYKSGRLLP EYRPAKSPTF 240 VSYLHSNSHK KVLEMRMQSI K* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.18687 | 0.0 | flower| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g032830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT141741 | 0.0 | BT141741.1 Medicago truncatula clone JCVI-FLMt-15D7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003619010.2 | 0.0 | GATA transcription factor 9 | ||||
TrEMBL | G7KQ55 | 0.0 | G7KQ55_MEDTR; GATA type zinc finger transcription factor family protein | ||||
STRING | AES75228 | 1e-160 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8487 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32890.1 | 5e-47 | GATA transcription factor 9 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g032830.1 |
Entrez Gene | 11408846 |
Publications ? help Back to Top | |||
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