PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr6g022080.1

Common Name

MTR_6g022080

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 251aa MW: 29298.8 Da PI: 5.6104

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr6g022080.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.8	2.1e-19	99	188	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn Y+ +GF+ r+ + k+k+++ ++++tfvC +eg+r ++++ ++r +++++r+gC +++v+ ++ +++w+++ ++ HnH++ Medtr6g022080.1 99 KFYNMYSCVCGFEGRRCRFVKNKDDD-VIQQTFVCHREGHRYARDDNkPYRKRVQKPTSRCGCMTSIQVHVDYgSERWYIKMFDDVHNHSF 188 6******************96666.**********998887356777799*************9*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.4E-16	99	188	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MDMDEILEIF ELSNASNIAG ETNIGLEGLE NMGSSSCSES VVCSSDDHME DTYNSMYGCN 60 FDDEYAVDCT NDFDKINFKE LIYDEIMMYH FSDRLVAFKF YNMYSCVCGF EGRRCRFVKN 120 KDDDVIQQTF VCHREGHRYA RDDNKPYRKR VQKPTSRCGC MTSIQVHVDY GSERWYIKMF 180 DDVHNHSFLD NKYEGMLPAH RKMSDYDKYQ MKATRKAGIP TSRIYGFFVS QAGGFKNLGY 240 SRRTMYNEQF *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr6g022080.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024627844.1	6e-87	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A072U7R3	0.0	A0A072U7R3_MEDTR; FAR1 DNA-binding domain protein
STRING	AES99052	2e-74	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3290	7	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	1e-17	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	Medtr6g022080.1
Entrez Gene	25495659

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]