PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr6g011200.1 | ||||||||
Common Name | MTR_6g011200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | LBD | ||||||||
Protein Properties | Length: 251aa MW: 28203.6 Da PI: 4.7329 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112 | 4e-35 | 9 | 106 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkae 93 aCaaCk++rrkC+++Cvlapyfpa++pk f n+h+lFG+sn++k+l+++++ r++am+s++ e+++ra+ P++G++gvi+ + ++++++e Medtr6g011200.1 9 ACAACKYQRRKCTRECVLAPYFPADEPKMFGNAHRLFGVSNIQKILNEIKDGGqRDEAMKSIIVESKIRANFPIHGCLGVIHMYAGMINKSSKE 102 7************************************************77655*********************************9999999 PP DUF260 94 lall 97 l++l Medtr6g011200.1 103 LDQL 106 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.244 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.9E-34 | 9 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MNIIKPNKAC AACKYQRRKC TRECVLAPYF PADEPKMFGN AHRLFGVSNI QKILNEIKDG 60 GQRDEAMKSI IVESKIRANF PIHGCLGVIH MYAGMINKSS KELDQLKWLL AYCKQNNHLQ 120 QQNLYSSIPS TSFQVFNNYG DVGNYYQNSE NNMMIPSSSY VSQTTPHDVN NSPIDTNLNI 180 NSMDTRGAKL SGDSNLGGDN VKLELDNNED LDDFDIQIRT IFDWEETEGL LDTDELPSSD 240 FNIDMNGPTL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-27 | 10 | 104 | 12 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-27 | 10 | 104 | 12 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr6g011200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013450910.1 | 0.0 | LOB domain-containing protein 27 | ||||
TrEMBL | A0A072UGP3 | 0.0 | A0A072UGP3_MEDTR; LOB domain protein | ||||
STRING | AES99850 | 6e-66 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 2e-33 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Phytozome | Medtr6g011200.1 |
Entrez Gene | 25495258 |
Publications ? help Back to Top | |||
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