PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g460740.1 | ||||||||
Common Name | MTR_5g060630, MTR_5g460740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ARF | ||||||||
Protein Properties | Length: 524aa MW: 58087.8 Da PI: 4.9364 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.2 | 5.6e-17 | 142 | 241 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +k+lt+sd+ + l +p++++e + +++ +s +l+++d + +W+ k++y kk ++y +t+GW++Fv+ ++L + D+vvF ++s Medtr5g460740.1 142 VKILTQSDTQSG--LFVPRECMELIfpnldLEDPMQSEKLSVTDIQDVVWTYKYSYhVKKLNSYKFTTGWSQFVRKKKLVALDSVVFI--KNSA 231 678877776654..899*****888**99955677999******************9999999*************************..779* PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++ +v+++rk Medtr5g460740.1 232 GKIFVGICRK 241 ********98 PP | |||||||
2 | Auxin_resp | 43.9 | 1.1e-15 | 265 | 349 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafet...edsserrl..sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a ++++F+vvY+P a + +Fvv ++ v +a+k+ + Gm +k+++++ +s+++ + Gt++ +s+ v + Wr+L+ Medtr5g460740.1 265 AVELAGKNMAFQVVYYPTANWCDFVVDASVVDEAMKNGWEFGMGIKLRLNEfasSNSKKTYYqpKGTISNMSN---VPSNVPSWRMLQ 349 567788999**************************************98752114444444488899999998...4457788**997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.4E-21 | 135 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.29E-18 | 137 | 241 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.419 | 139 | 242 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.25E-14 | 140 | 240 | No hit | No description |
SMART | SM01019 | 1.4E-8 | 141 | 242 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.5E-14 | 142 | 241 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.1E-13 | 265 | 349 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 524 aa Download sequence Send to blast |
MSLPQPRRVD SKIWQIRAGP AVKIPKIGSK VYYFSEGHLE HACSSPNIET ELLLCLRPPS 60 VLCIISSVDL LANLHTDEVF AKLLLTPVTT DGSVQIQEPA PPDFPDKEEN DGNNLVVQVQ 120 EPAPPEVPDE EDDDSNNLVS YVKILTQSDT QSGLFVPREC MELIFPNLDL EDPMQSEKLS 180 VTDIQDVVWT YKYSYHVKKL NSYKFTTGWS QFVRKKKLVA LDSVVFIKNS AGKIFVGICR 240 KAMYPATEEE GGKSENLTEK AVKDAVELAG KNMAFQVVYY PTANWCDFVV DASVVDEAMK 300 NGWEFGMGIK LRLNEFASSN SKKTYYQPKG TISNMSNVPS NVPSWRMLQV NWDGPDISQN 360 PNRVNPWQVD IYPIPSQSSS PLQMPHSYPP IPPPLLPFPP TKSPRLSQSS SPLQMPFSYP 420 PTPPPLLQSS MSTSSFIPMT ELPYSTIGSL NQTLLNSDTF PDGMLGASHD HLSASDLSKV 480 LSDKGDGFNR NRSMVGWSGT LCDTEPRNHN SLNSFGTNEP CTK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-36 | 9 | 370 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g460740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003614872.1 | 0.0 | auxin response factor 17 | ||||
Refseq | XP_013454014.1 | 0.0 | auxin response factor 17 | ||||
TrEMBL | G7K9Y1 | 0.0 | G7K9Y1_MEDTR; Auxin response factor | ||||
STRING | AES97830 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4030 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 4e-64 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g460740.1 |
Entrez Gene | 11423354 | 25495029 |
Publications ? help Back to Top | |||
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