PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g098470.1 | ||||||||
Common Name | MTR_5g098470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | C2H2 | ||||||||
Protein Properties | Length: 271aa MW: 30880.7 Da PI: 9.4829 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15 | 7.2e-05 | 110 | 131 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C+k F ++ L+ H+r+H Medtr5g098470.1 110 SCDVCKKNFQSNKALHGHMRSH 131 7********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.58E-8 | 62 | 131 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 8.4E-4 | 62 | 87 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.868 | 64 | 87 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.0E-4 | 64 | 88 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.8 | 64 | 86 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 66 | 86 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.034 | 109 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.032 | 109 | 131 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.4E-7 | 111 | 133 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MDPNDQKKNN NKFDVGRIHQ NTRANSMKAI EKKKSLASIS KSCKVYEKPK GRHHDEGSTS 60 SKIHKCELCN KIFRCGKGLG GHKRIHSQAL GKEGESKAEA NCNSNDVKLS CDVCKKNFQS 120 NKALHGHMRS HPEREWRGMN PNKDNNIDYH DYDQDQYFLS AFNSKELVID EESKSWPRRL 180 FKTCKRGRSS GEVVIAAQIL VYMSTDKHLH DTFDEDLDNE DKKENVLPST SGLVGDIDET 240 KLKNDNNKRR KKLVKLMNPY STSKDNVLLD * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g098470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU463047 | 0.0 | CU463047.2 Medicago truncatula chromosome 5 clone mth2-71h21, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003618052.1 | 0.0 | zinc finger protein AZF1 | ||||
TrEMBL | G7K0M6 | 0.0 | G7K0M6_MEDTR; C2H2 and C2HC zinc finger protein | ||||
STRING | AET01011 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 6e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g098470.1 |
Entrez Gene | 11423750 |
Publications ? help Back to Top | |||
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