PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g094430.3 | ||||||||
Common Name | MTR_5g094430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 434aa MW: 47530.1 Da PI: 8.0107 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.2 | 6.1e-32 | 88 | 145 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d++++ei+Y+g+H+h+k Medtr5g094430.3 88 NDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 145 8****************************************.***************85 PP | |||||||
2 | WRKY | 106.8 | 1.1e-33 | 251 | 309 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Medtr5g094430.3 251 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 309 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.9E-27 | 82 | 146 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.14E-24 | 86 | 146 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-33 | 87 | 145 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.492 | 88 | 146 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-24 | 88 | 144 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.2E-38 | 236 | 311 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.63E-30 | 243 | 311 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 246 | 311 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 251 | 310 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-26 | 252 | 309 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MLFTHFKVPA DFNNHVSEKS TQMEGSGNGQ SFRSSPLNEN EIEDQSNELS LSSSPVHMVS 60 SGASAPVNVN SDEPNHKGST ANGPQSSNDG YNWRKYGQKH VKGSEFPRSY YKCTHPNCEV 120 KKLFERSHDG QITEIIYKGT HDHPKPQPSN RYSAGSVMST QGERSDNRAS SLAVRDDKAS 180 NSPEQSVVAT NDLSPEGAGF VSTRTNDGVD DDDPFSKQRK MELGNADIIP VVKPIREPRV 240 VVQTMSEIDI LDDGYRWRKY GQKVVRGNPN PRSYYKCTNA GCPVRKHVER ASHDPKAVIT 300 TYEGKHNHDV PAARSSSHDM AGHATSFRQT RIKLEENDTI SLDLGMGISS TAGNRSNGQG 360 KILLSEFGNS SHTHTSNSNF KFVHNTTSAP VYYGVLNNGS NPFGSRENRN DGSSLNHSAN 420 PCSQTMGRIL MGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-38 | 88 | 312 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-38 | 88 | 312 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.11166 | 0.0 | leaf| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g094430.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137079 | 0.0 | AC137079.9 Medicago truncatula clone mth2-27d17, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003617695.1 | 0.0 | probable WRKY transcription factor 20 isoform X1 | ||||
Swissprot | Q93WV0 | 1e-140 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | A0A072UGA7 | 0.0 | A0A072UGA7_MEDTR; WRKY family transcription factor | ||||
STRING | AET00654 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 1e-137 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g094430.3 |
Entrez Gene | 11433241 |
Publications ? help Back to Top | |||
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