PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g094430.2
Common NameMTR_5g094430
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 412aa    MW: 44970.2 Da    PI: 7.9963
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g094430.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.7e-3266123260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Medtr5g094430.2  66 NDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 123
                      8****************************************.***************85 PP
2WRKY106.91e-33229287159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Medtr5g094430.2 229 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 287
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-2760124IPR003657WRKY domain
SuperFamilySSF1182901.06E-2464124IPR003657WRKY domain
SMARTSM007741.2E-3365123IPR003657WRKY domain
PROSITE profilePS5081122.49266124IPR003657WRKY domain
PfamPF031061.3E-2466122IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-38214289IPR003657WRKY domain
SuperFamilySSF1182907.98E-30221289IPR003657WRKY domain
PROSITE profilePS5081138.825224289IPR003657WRKY domain
SMARTSM007743.1E-39229288IPR003657WRKY domain
PfamPF031062.2E-26230287IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MEGSGNGQSF RSSPLNENEI EDQSNELSLS SSPVHMVSSG ASAPVNVNSD EPNHKGSTAN  60
GPQSSNDGYN WRKYGQKHVK GSEFPRSYYK CTHPNCEVKK LFERSHDGQI TEIIYKGTHD  120
HPKPQPSNRY SAGSVMSTQG ERSDNRASSL AVRDDKASNS PEQSVVATND LSPEGAGFVS  180
TRTNDGVDDD DPFSKQRKME LGNADIIPVV KPIREPRVVV QTMSEIDILD DGYRWRKYGQ  240
KVVRGNPNPR SYYKCTNAGC PVRKHVERAS HDPKAVITTY EGKHNHDVPA ARSSSHDMAG  300
HATSFRQTRI KLEENDTISL DLGMGISSTA GNRSNGQGKI LLSEFGNSSH THTSNSNFKF  360
VHNTTSAPVY YGVLNNGSNP FGSRENRNDG SSLNHSANPC SQTMGRILMG P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3866290878Probable WRKY transcription factor 4
2lex_A2e-3866290878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.111660.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g094430.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370790.0AC137079.9 Medicago truncatula clone mth2-27d17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617695.10.0probable WRKY transcription factor 20 isoform X1
RefseqXP_024640151.10.0probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV01e-140WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A072UGA70.0A0A072UGA7_MEDTR; WRKY family transcription factor
STRINGAET006540.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-137WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]