PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g094430.1
Common NameMTR_5g094430
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 546aa    MW: 59332.4 Da    PI: 8.2236
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g094430.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.88.4e-32200257260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Medtr5g094430.1 200 NDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 257
                      8****************************************.***************85 PP
2WRKY106.31.5e-33363421159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Medtr5g094430.1 363 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 421
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-26194258IPR003657WRKY domain
SuperFamilySSF1182901.57E-24198258IPR003657WRKY domain
SMARTSM007741.2E-33199257IPR003657WRKY domain
PROSITE profilePS5081122.492200258IPR003657WRKY domain
PfamPF031061.9E-24200256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-37348423IPR003657WRKY domain
SuperFamilySSF1182901.23E-29355423IPR003657WRKY domain
PROSITE profilePS5081138.825358423IPR003657WRKY domain
SMARTSM007743.1E-39363422IPR003657WRKY domain
PfamPF031063.2E-26364421IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MEVTTTNSGE GTPTDPNRNG SVQNSMARYK LMSPAKLPIS RSPCITIPAG YSPTSLLESP  60
VLLSNMKVEP SPTTGSLLQA LNCSMASATF PVTSACFNTS TVNGRKSSFF EFKPQDRNMV  120
PADFNNHVSE KSTQMEGSGN GQSFRSSPLN ENEIEDQSNE LSLSSSPVHM VSSGASAPVN  180
VNSDEPNHKG STANGPQSSN DGYNWRKYGQ KHVKGSEFPR SYYKCTHPNC EVKKLFERSH  240
DGQITEIIYK GTHDHPKPQP SNRYSAGSVM STQGERSDNR ASSLAVRDDK ASNSPEQSVV  300
ATNDLSPEGA GFVSTRTNDG VDDDDPFSKQ RKMELGNADI IPVVKPIREP RVVVQTMSEI  360
DILDDGYRWR KYGQKVVRGN PNPRSYYKCT NAGCPVRKHV ERASHDPKAV ITTYEGKHNH  420
DVPAARSSSH DMAGHATSFR QTRIKLEEND TISLDLGMGI SSTAGNRSNG QGKILLSEFG  480
NSSHTHTSNS NFKFVHNTTS APVYYGVLNN GSNPFGSREN RNDGSSLNHS ANPCSQTMGR  540
ILMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-38200424878Probable WRKY transcription factor 4
2lex_A7e-38200424878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.111660.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g094430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370790.0AC137079.9 Medicago truncatula clone mth2-27d17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617695.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV01e-176WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLG7K4D80.0G7K4D8_MEDTR; Putative transcription factor WRKY family
STRINGAET006540.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-170WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]