PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g088760.3
Common NameMTR_5g088760
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YC
Protein Properties Length: 294aa    MW: 32703.4 Da    PI: 4.5706
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g088760.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.52.2e-163772498
            NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                     arikki++aded+ +i+  +P l+ska elf+ +l  r++  +     +t++   ++++++  ++fdfl d+v +
  Medtr5g088760.3  3 ARIKKIMQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLGRGAKTVNAFHLKQCIQTCNVFDFLKDTVSK 77
                     8**********************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008084.9E-16362IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.7E-22376IPR009072Histone-fold
SuperFamilySSF471131.71E-18979IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MPARIKKIMQ ADEDIGKIAL AVPLLVSKAL ELFLQDLCDR TYEITLGRGA KTVNAFHLKQ  60
CIQTCNVFDF LKDTVSKVPD LGGSAATGDD QTVTKRRKVS EDDDDDDSDE EIKRSKMREP  120
AHTSGRGRGR GRGRGRGRGS KTVDQEINSH VKFEDDCEAS KQNGNHTQNN ESPEIVRESD  180
EVKLSSPVRE PEEVKHCSPV RKPAEVVVRN FDLNLNPDPD DDMDVISTPT PIPTGSSSKS  240
VSEEKMKSIS EEKIEEYPGW SLSDMEKMAI DPLQLANLSK RIDEDIEDYD EEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-192631475Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127137RGRGRGRGRGR
2129138RGRGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.260550.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g088760.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541850.0CR954185.3 Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013454333.10.0dr1-associated corepressor isoform X2
TrEMBLA0A072UF570.0A0A072UF57_MEDTR; Negative cofactor 2 transcriptional co-repressor, putative
STRINGGLYMA02G44500.21e-118(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.16e-51NF-YC family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]