PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g088760.1
Common NameMTR_5g088760
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NF-YC
Protein Properties Length: 286aa    MW: 31765.1 Da    PI: 4.4525
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g088760.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC36.79e-121693098
            NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                     ++aded+ +i+  +P l+ska elf+ +l  r++  +     +t++   ++++++  ++fdfl d+v +
  Medtr5g088760.1  1 MQADEDIGKIALAVPLLVSKALELFLQDLCDRTYEITLGRGAKTVNAFHLKQCIQTCNVFDFLKDTVSK 69
                     899**************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.9E-18171IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.4E-17168IPR009072Histone-fold
PfamPF008083.5E-11154IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MQADEDIGKI ALAVPLLVSK ALELFLQDLC DRTYEITLGR GAKTVNAFHL KQCIQTCNVF  60
DFLKDTVSKV PDLGGSAATG DDQTVTKRRK VSEDDDDDDS DEEIKRSKMR EPAHTSGRGR  120
GRGRGRGRGR GSKTVDQEIN SHVKFEDDCE ASKQNGNHTQ NNESPEIVRE SDEVKLSSPV  180
REPEEVKHCS PVRKPAEVVV RNFDLNLNPD PDDDMDVIST PTPIPTGSSS KSVSEEKMKS  240
ISEEKIEEYP GWSLSDMEKM AIDPLQLANL SKRIDEDIED YDEEV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-141552175Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119129RGRGRGRGRGR
2121130RGRGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.260550.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g088760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9541850.0CR954185.3 Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003617184.20.0AP-3 complex subunit beta-1 isoform X3
RefseqXP_013454332.10.0dr1-associated corepressor isoform X1
RefseqXP_013454333.10.0dr1-associated corepressor isoform X2
TrEMBLA0A072UF570.0A0A072UF57_MEDTR; Negative cofactor 2 transcriptional co-repressor, putative
TrEMBLA0A072UGZ00.0A0A072UGZ0_MEDTR; Negative cofactor 2 transcriptional co-repressor, putative
TrEMBLG7KCS20.0G7KCS2_MEDTR; Negative cofactor 2 transcriptional co-repressor, putative
STRINGGLYMA02G44500.21e-113(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.14e-47NF-YC family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]