PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g083340.2 | ||||||||
Common Name | MTR_5g083340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ERF | ||||||||
Protein Properties | Length: 408aa MW: 44962.7 Da PI: 4.4874 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.5 | 7.7e-19 | 84 | 133 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr++ +g+WvAeIr+p + r r +lg+f ta+eAa a++ a+++++g Medtr5g083340.2 84 KYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFPTAQEAALAYDYAARAMYG 133 8*****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-13 | 84 | 133 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.037 | 84 | 141 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.20E-33 | 84 | 142 | No hit | No description |
SMART | SM00380 | 1.3E-36 | 84 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 84 | 142 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-22 | 84 | 142 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.4E-10 | 85 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
MGAPAYDQCF NVSLAPLELS KKRKTRSRGK GTKSVAETLA KWKEYNEKLY AGKDDGKPKR 60 KAPAKGSKKG CMKGKGGPQN SENKYRGVRQ RTWGKWVAEI REPNRGSRLW LGTFPTAQEA 120 ALAYDYAARA MYGPSARLNF PDISDYRSIQ EYLKDSSAAA ASCCSSVATT PATSETTTVS 180 SHSEVCAIED VKEIPRIPVH MNNTVDVCYK GYEATSPTSR MKQEPMDEPD DIIDLGGGEI 240 QDANSEGTQT LTQPQTHDAV LVGEGVCNDQ MDFSWMDNFD FDDDYLKSFS VDEFFHVDDF 300 FEVDELLGQL DNNPIDDSGV MQSLDFGQVG LPEESNPQVG TTSSFFYELE NPDAKLLGSL 360 PHMERTASGV DYGLPLNFNG GGEDTPFLDL DYDLNHDSRG MQGRKND* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-18 | 85 | 141 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.14309 | 0.0 | pod| root |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g083340.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU302335 | 0.0 | CU302335.1 Medicago truncatula chromosome 5 clone mth2-155g22, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616701.1 | 0.0 | dehydration-responsive element-binding protein 2A | ||||
Refseq | XP_024639092.1 | 0.0 | dehydration-responsive element-binding protein 2A | ||||
TrEMBL | G7K779 | 0.0 | G7K779_MEDTR; Dehydration-responsive element-binding protein | ||||
STRING | AES99659 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 4e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g083340.2 |
Entrez Gene | 11424990 |
Publications ? help Back to Top | |||
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