PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g082950.1
Common NameMTR_5g082950
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 334aa    MW: 37566.4 Da    PI: 7.4099
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g082950.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.9e-1865114255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aaka+++a+  l+g
  Medtr5g082950.1  65 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFSTAEDAAKAYDRAAIILYG 114
                      59****999.**********954...5**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.28E-3165122No hitNo description
SuperFamilySSF541711.83E-2065123IPR016177DNA-binding domain
PROSITE profilePS5103222.19465122IPR001471AP2/ERF domain
PfamPF008471.0E-1165110IPR001471AP2/ERF domain
SMARTSM003804.1E-3865128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-2965122IPR001471AP2/ERF domain
PRINTSPR003672.9E-106677IPR001471AP2/ERF domain
PRINTSPR003672.9E-1088104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MDSPLHHVQE TKPTANTVVT TTPSETSNNS TDNNSNNSSS SNTTNNNKSN RKCKGKGGPD  60
NNKFRYRGVR QRSWGKWVAE IREPRKRTRK WLGTFSTAED AAKAYDRAAI ILYGSRAQLN  120
LQPSASSSSS QNSSSSSRNS SSSNSNTTLR PLLPRPSGFS VYNNFVPFGV YNNFHHHHQP  180
VFYNNNNGLV HFHHNPHQEM VQVQVQQHQQ YHHQQLNQDF EHASGDSVKS ITSYGQNIHS  240
SHHHDQEQHA QNVLNQQHAQ HVLNQQQQQM NIQNCVGSSN FGSQNNNDID GTVDLDPVGD  300
CVGSPNSMWP ALTSEEDYTT SLWDYNDPFF FDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1966121359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g082950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1447290.0AC144729.29 Medicago truncatula clone mth2-15j6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616666.10.0ethylene-responsive transcription factor ABI4
TrEMBLG7K2640.0G7K264_MEDTR; AP2 domain class transcription factor
STRINGAES996240.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88472940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.11e-35ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]