PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g079670.1 | ||||||||
Common Name | MTR_5g079670 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB | ||||||||
Protein Properties | Length: 214aa MW: 24065.6 Da PI: 9.176 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.7e-18 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+d+++ +G g+W +I++ g++R++k+c++rw++yl Medtr5g079670.1 13 KGAWSKQEDQKLIDYIQVHGEGCWGSIPKAAGLHRCGKSCRLRWLNYL 60 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.8e-15 | 67 | 110 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g + ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ Medtr5g079670.1 67 GIFAQDEEDLIIKLHALLGNR-WALIAGRLP-GRTDNEVKNYWNSH 110 66779****************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 4 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.37 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.98E-29 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.7E-15 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-16 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.02E-11 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 25.011 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-24 | 63 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-14 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.6E-14 | 69 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.70E-10 | 71 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MRKPCCDKEN INKGAWSKQE DQKLIDYIQV HGEGCWGSIP KAAGLHRCGK SCRLRWLNYL 60 RPDIKRGIFA QDEEDLIIKL HALLGNRWAL IAGRLPGRTD NEVKNYWNSH IRRKLIKMGI 120 DPNNHKLHKG FPTVGTSSCV ESMNKENNKL SIKSCDAPIN NDVSFTKKDT TSIINSSSSL 180 NLDLTIALPS PNRIVIPNCE SPKTRDMDID LNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-30 | 11 | 115 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed at low level. Highly expressed in siliques. Weakly expressed in seedlings, young and mature leaves, cauline leaves, stems, flower buds and roots. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g079670.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC129092 | 0.0 | AC129092.13 Medicago truncatula clone mth2-17n16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616388.1 | 1e-156 | myb-related protein 330 | ||||
Swissprot | Q9SZP1 | 9e-71 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | G7KBP3 | 1e-155 | G7KBP3_MEDTR; Myb transcription factor | ||||
STRING | AES99346 | 1e-156 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 6e-72 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g079670.1 |
Entrez Gene | 11436928 |