PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g075380.1 | ||||||||
Common Name | MTR_5g075380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 163aa MW: 19122.4 Da PI: 9.9279 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.2 | 8e-12 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i n++ r t+ kR + ++KK +E+ +LC+++++ i+f ++ Medtr5g075380.1 10 FITNHTARRATYKKRVQSLMKKLNEITTLCGVKACGIVFKPD 51 899**********************************99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.0E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.231 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.88E-19 | 4 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.86E-18 | 4 | 83 | No hit | No description |
Pfam | PF00319 | 4.7E-13 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MAGKKVKLAF ITNHTARRAT YKKRVQSLMK KLNEITTLCG VKACGIVFKP DDLEPQIWPS 60 IEGVHSVLVR FMQTPNFDRD RKMFDHESYL KERIQKLNEK LKKKMKENRM MWMSVQLHHY 120 LEAGNVPEDL STSDMNDLTY VVDEKMKEIN MKMVQLEKDE RS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g075380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC141923 | 0.0 | AC141923.27 Medicago truncatula clone mth2-7f19, complete sequence. | |||
GenBank | CR962133 | 0.0 | CR962133.1 Medicago truncatula chromosome 5 clone mth2-17h8, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003616031.1 | 1e-119 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | G7K0T4 | 1e-117 | G7K0T4_MEDTR; MADS-box transcription factor family protein | ||||
STRING | AES98989 | 1e-118 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF452 | 33 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 2e-29 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g075380.1 |
Entrez Gene | 11427239 |
Publications ? help Back to Top | |||
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