PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g067700.1
Common NameMTR_5g067700
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 237aa    MW: 26898.2 Da    PI: 5.4013
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g067700.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.86e-25107166359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      D ++WrKYGqK++ +sefprsY+rC+++   gC+++k+v+ ++++p++ ++tY g H+++
  Medtr5g067700.1 107 DNHSWRKYGQKKIMDSEFPRSYFRCSHKddqGCSATKQVQMTHDNPDMYQTTYIGIHTCN 166
                      99*************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-2499166IPR003657WRKY domain
SuperFamilySSF1182906.8E-24102167IPR003657WRKY domain
SMARTSM007749.5E-33105167IPR003657WRKY domain
PfamPF031065.1E-24107165IPR003657WRKY domain
PROSITE profilePS5081118.177107168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MDNNIPESVR KKVIIKELVK GQEAATKLKF LLQNENPYGA DHLAAYVLRS FTEALSIISQ  60
PSCDDFLNLI KSADSINESR KKGRRGCYKR RKSAAEIWTI VSQTIVDNHS WRKYGQKKIM  120
DSEFPRSYFR CSHKDDQGCS ATKQVQMTHD NPDMYQTTYI GIHTCNNTPK ASTSNEAIFV  180
NSDAEVTPTP SLTIKQEYLK EETPSNVMEC DDADDMLVFQ NLALEFGDIE FNFDEN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-2099165268OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g067700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0097490.0CT009749.1 Medicago truncatula chromosome 5 clone mth2-46e3, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615415.11e-180probable WRKY transcription factor 70 isoform X1
TrEMBLG7K6431e-178G7K643_MEDTR; WRKY family transcription factor
STRINGAES983731e-179(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47003056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-34WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]