PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g062970.1 | ||||||||
Common Name | MTR_5g062970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 240aa MW: 26852.1 Da PI: 7.6642 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62.1 | 9.3e-20 | 138 | 225 | 1 | 83 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt+sd ++ + +++p ++++ + + ++ s++l+++d +gr W+ ++iyr+ks+r+++++GW +Fv+ ++L +gD++vF Medtr5g062970.1 138 FVKILTQSDCNSGCGFIVPLPCVDLIlpklslD-DPMPSQKLSVTDIQGRIWQYTHIYRGKSKRHLFSRGWTSFVNNKKLVAGDSFVFI 225 89*********************888****963.4455679***********************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.31E-23 | 135 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-25 | 136 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.37E-18 | 137 | 224 | No hit | No description |
Pfam | PF02362 | 6.8E-17 | 138 | 225 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.2E-11 | 138 | 235 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.729 | 138 | 239 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MMLITISNRA QSSALLSDTG ELHSEAFPTK SIFTIPTKIW QKCVGASVKI PKLHSKVYYF 60 PQGHLKHVSP HTIITLLHCY PPSISCIISA VDLLVDPHTD EVFAKLLLTP VMDGHGHEQE 120 APPEVPAEDD DGYNVVSFVK ILTQSDCNSG CGFIVPLPCV DLILPKLSLD DPMPSQKLSV 180 TDIQGRIWQY THIYRGKSKR HLFSRGWTSF VNNKKLVAGD SFVFIKNSAW WLMLNWHHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 2e-37 | 38 | 239 | 22 | 225 | Auxin response factor 1 |
4ldw_A | 2e-37 | 38 | 239 | 22 | 225 | Auxin response factor 1 |
4ldw_B | 2e-37 | 38 | 239 | 22 | 225 | Auxin response factor 1 |
4ldx_A | 1e-37 | 38 | 239 | 22 | 225 | Auxin response factor 1 |
4ldx_B | 1e-37 | 38 | 239 | 22 | 225 | Auxin response factor 1 |
4ldy_A | 2e-37 | 38 | 239 | 22 | 225 | Auxin response factor 1 |
4ldy_B | 2e-37 | 38 | 239 | 22 | 225 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g062970.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU914132 | 0.0 | CU914132.2 Medicago truncatula chromosome 5 clone mth2-49m20, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024640663.1 | 1e-160 | auxin response factor 17 | ||||
Swissprot | Q84WU6 | 1e-54 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | G7KAA1 | 1e-176 | G7KAA1_MEDTR; Auxin response factor, putative | ||||
STRING | AES98003 | 1e-177 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 4e-57 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g062970.1 |
Entrez Gene | 11423383 |