PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g060780.1 | ||||||||
Common Name | MTR_5g060780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ARF | ||||||||
Protein Properties | Length: 400aa MW: 44396.4 Da PI: 6.4021 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45 | 2e-14 | 114 | 205 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 k+lt+sd ++ l++p ++ + + +++ +s+ +t++d+++++W+ +++y+++s l +GW +Fv++++L ++D+vvF ++s ++ Medtr5g060780.1 114 KTLTQSDCTRV--LCVPIECSNLIfpklDLD--KSQSITVTDLKNQEWRYTYTYSNSS---RLHTGWLNFVREKKLVANDSVVFI--KNSAGKI 198 67766666654..777877764448866556..56679999***********988888...4899********************..779**** PP EEEEE-S CS B3 93 vvkvfrk 99 v+++r+ Medtr5g060780.1 199 SVGIRRN 205 ****997 PP | |||||||
2 | Auxin_resp | 43.1 | 1.8e-15 | 229 | 313 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPras.tseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.....sGtvvgvsdldpvrWpnSkWrsL 82 aa+ a+++++F+vvY+P as + +Fvv ++ v +a+k+ + GmR+k+ + + +ss+ ++ Gt++ v + + + +Wr L Medtr5g060780.1 229 AAELAEKNTAFDVVYYPTASgWRDFVVDAKTVDDAMKIGWKSGMRVKLPLKKYESSNSKMtisqlKGTISFVFNHS---SNVPNWRIL 313 688999***********986489*************************9999888887764333445555554422...344568877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.24E-18 | 108 | 205 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.518 | 110 | 206 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.81E-13 | 111 | 204 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-19 | 111 | 207 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.3E-7 | 112 | 206 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-11 | 113 | 205 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 8.0E-13 | 229 | 313 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MSLPLPPRVD PKIWQICVGP DVKIPKIHSK VYYFPRGHLE HACSSPTAAT RTILDRYRSS 60 IPCIVSSVDL FVDPHTDEVF AKLLLTPVTD QEPPPPVVPG QEDDDGDNLV SYVKTLTQSD 120 CTRVLCVPIE CSNLIFPKLD LDKSQSITVT DLKNQEWRYT YTYSNSSRLH TGWLNFVREK 180 KLVANDSVVF IKNSAGKISV GIRRNTKFTT DEAAEGSENL TDEIKVLDAA ELAEKNTAFD 240 VVYYPTASGW RDFVVDAKTV DDAMKIGWKS GMRVKLPLKK YESSNSKMTI SQLKGTISFV 300 FNHSSNVPNW RILEVNWDGL DIPQIPNLVN PWQVEVYNIH APSTSSSTVN NPRLAESSSP 360 QQIPYSMPGT SGPMSQAPSE VSSLAYLCNI GLQSQLGTR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 2e-42 | 12 | 343 | 22 | 361 | Auxin response factor 1 |
4ldy_B | 2e-42 | 12 | 343 | 22 | 361 | Auxin response factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g060780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024640646.1 | 0.0 | auxin response factor 17 | ||||
TrEMBL | G7K918 | 0.0 | G7K918_MEDTR; Auxin response factor | ||||
STRING | AES97840 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16207 | 2 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 7e-59 | auxin response factor 17 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g060780.1 |
Entrez Gene | 11435441 |
Publications ? help Back to Top | |||
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