PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g058860.1
Common NameMTR_5g058860
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 507aa    MW: 56739.6 Da    PI: 4.5571
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g058860.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.12.6e-1021164971374
             GRAS   1 lvelLlecAeavssgdle..laqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                      lv+lL+++Aea++  +++  laq +L rl++l +s +g++m+Rlaayft AL++ l++  + +    +    +  ++++ l+a++l++++sP++
  Medtr5g058860.1 116 LVHLLMAAAEALTGTNKShhLAQVILIRLKDLvSSTHGTNMERLAAYFTDALQTLLNG--TDCGGHHKLCLLTGPHQTDILSAFQLLQDMSPYV 207
                      68**********98666555************888899********************..444444444444444699**************** PP

             GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg..ppslRiTgvgspesg.......skeeleetgerLakfAeelgvpf 176
                      kf+h+taNqaIleav +e+rvHi+Dfdi++G+QW++L+q+L+sR+eg   p+lRiT+++++++        s  +++etg+rL+ fA+++g pf
  Medtr5g058860.1 208 KFAHFTANQAILEAVTHERRVHIVDFDIMEGAQWASLIQSLSSRKEGlpGPHLRITALSRNKERgngrsrsSFATVQETGRRLTTFAASVGQPF 301
                      *********************************************763266*********888799999988899******************* PP

             GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfd 269
                       f+    ++ e +++++L++ +gEal+ n+v++l +l  +    ++ + ++L+  k+l  k+v++ve+e+   +++ F+  f+++l+ ysa++d
  Medtr5g058860.1 302 TFHQCRLESDERFRTSSLKLVRGEALVFNCVMHLPHLSYR---ASDSIASFLNGAKELGTKLVTLVEEEVGPiTDAGFVGLFMDSLHRYSAMYD 392
                      ****999999************************999843...3344569*******************9988********************* PP

             GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgW 362
                      s+ea++p ++ +r+ vE+++lg++i+  va+     +e++++ ++W e+l+  GF+ v++s+ + +qaklll  ++ dgyrvee  ++ lvlgW
  Medtr5g058860.1 393 SFEAGFPMNKWARSLVEQVFLGPRIMGSVAQLYMTGEEEEQERGSWGEWLGVEGFRGVNISYGNHCQAKLLLGLFN-DGYRVEELgNNKLVLGW 485
                      ***********************************999**************************************.******98799999*** PP

             GRAS 363 kdrpLvsvSaWr 374
                      k+r+L+s+S+W+
  Medtr5g058860.1 486 KSRRLLSASVWT 497
                      ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.27390477IPR005202Transcription factor GRAS
PfamPF035149.1E-100116497IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MEIHDMDIDI DMIMDVVPDF LEFSNQSNTT TPPTSDDDTT WSPLLDLDFF TTNQDDFHNF  60
IDSLTNDEIT PVAPNLDNKV VEQDDEEEEE DGSMGDMSNS NSTTEEEEDD RKGLRLVHLL  120
MAAAEALTGT NKSHHLAQVI LIRLKDLVSS THGTNMERLA AYFTDALQTL LNGTDCGGHH  180
KLCLLTGPHQ TDILSAFQLL QDMSPYVKFA HFTANQAILE AVTHERRVHI VDFDIMEGAQ  240
WASLIQSLSS RKEGLPGPHL RITALSRNKE RGNGRSRSSF ATVQETGRRL TTFAASVGQP  300
FTFHQCRLES DERFRTSSLK LVRGEALVFN CVMHLPHLSY RASDSIASFL NGAKELGTKL  360
VTLVEEEVGP ITDAGFVGLF MDSLHRYSAM YDSFEAGFPM NKWARSLVEQ VFLGPRIMGS  420
VAQLYMTGEE EEQERGSWGE WLGVEGFRGV NISYGNHCQA KLLLGLFNDG YRVEELGNNK  480
LVLGWKSRRL LSASVWTCMS EIEYDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-551055008382Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and leaves. {ECO:0000269|PubMed:15961668}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g058860.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614758.20.0nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A396HRK90.0A0A396HRK9_MEDTR; Putative transcription factor GRAS family
TrEMBLG7K8U70.0G7K8U7_MEDTR; GRAS family transcription factor
STRINGAES977160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-140GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]