PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g054900.2
Common NameMTR_5g054900
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 461aa    MW: 51669.8 Da    PI: 6.861
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g054900.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.4e-11177211336
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLee.kvk 36 
                      + k  rr+++NReAAr+sR+RKka++++Le  +vk
  Medtr5g054900.2 177 DHKTLRRLAQNREAARKSRLRKKAYVQQLESsRVK 211
                      67899************************962444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003380.0018175226IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.151177221IPR004827Basic-leucine zipper domain
PfamPF001704.9E-8178214IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.19E-7179220No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-7180221No hitNo description
PROSITE patternPS000360182197IPR004827Basic-leucine zipper domain
PfamPF141444.1E-25258332IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MQSFKTAQSN SQLYCHQPFL LRGEDINRNT MRFSDIGDFH HSSPFFPQQD VVDLTSNCMF  60
SSVKSNNVVI GGSNMQYGTT INMNVGSAEI ASNGAGCSDA GLQQHQQQHQ LMYNKGIASL  120
PLGNCHVENW ADSGVADNNS QQTDDTSTDI DIDTDDKHQS NGGNAHSNNQ TKFRAEDHKT  180
LRRLAQNREA ARKSRLRKKA YVQQLESSRV KLMQLEQELQ RGMFIANPGD QGHSSVGNGA  240
LAFDMEYTHW VDEHQRMLND LRSALNSQMG DNELHLLVDG VMSHHNELFR LKSIGAKTDV  300
FHMLYGLWKT PVERFFIWHG AFRSSEILKI VKNHLEPLTE NQLMGICSLQ QSTQQAEDAL  360
SHGMEALKQS LLETLSSTPS VSGTGSGNVS DYMGQMAFAM NKLASLEDFL HKADLLKQET  420
LQQLQRILTT RQTARALLVR NDYISRLRAL SSLWLARPRE *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g054900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3023321e-150CU302332.2 Medicago truncatula chromosome 5 clone mth2-139e15, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013453938.10.0transcription factor TGA2.3 isoform X2
SwissprotQ415581e-144HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A072UDW80.0A0A072UDW8_MEDTR; BZIP family transcription factor
STRINGAES974690.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60223149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-111bZIP family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]