PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g039600.1 | ||||||||
Common Name | MTR_5g039600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | TCP | ||||||||
Protein Properties | Length: 417aa MW: 44227.7 Da PI: 6.915 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.2 | 5e-41 | 61 | 193 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 ++k+ +++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ Medtr5g039600.1 61 PPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSAPshyfrg 154 789******************************************************************9997667777777744444555556 PP TCP 89 ......................................k 89 + Medtr5g039600.1 155 nyfnpssfsstaaqlrnraewdrtmnmnmnmnmnvvadD 193 666665555555544444444444444444444444441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-40 | 66 | 214 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.683 | 67 | 121 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MELEGDHHQS NGIRSRPNFP LQLLEKKDNN ILDVSEEQTC TTTGNDGCTA IISSDQQKKP 60 PPKRASTKDR HTKVDGRGRR IRMPAACAAR VFQLTRELGH KSDGETIEWL LQQAEPAVIA 120 ATGTGTIPAN FTSLNISLRS SGSTMSAPSH YFRGNYFNPS SFSSTAAQLR NRAEWDRTMN 180 MNMNMNMNVV ADDSRRSSNS TMLENPSSLS AMLNFNNVQN AILQAKQELR EENAAATASG 240 GGGGFELLGS DSDGSMGRKR RSEQELLSQN MGSYLLQSNV GSLPSSHASN TAAFWMVTGN 300 GNQGVNVNGG NGNDPIWAIP SVGNNGMYRG AMTSPNGFHF MNFAASPMNL MPGSQLGSGI 360 VGGGGGGILA ESNLSMLSAM NAYRQISTNG MSNSSGQHHG GGGGGDDEHD SSSQHS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.5496 | 0.0 | flower| leaf| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g039600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP016157 | 0.0 | FP016157.1 Medicago truncatula chromosome 5 clone mth4-11o22, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003613691.1 | 0.0 | transcription factor TCP15 | ||||
TrEMBL | G7KCJ2 | 0.0 | G7KCJ2_MEDTR; TCP family transcription factor | ||||
STRING | AES96649 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2120 | 32 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69690.1 | 4e-52 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g039600.1 |
Entrez Gene | 11419087 |
Publications ? help Back to Top | |||
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