PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g029850.1 | ||||||||
Common Name | MTR_5g029850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 76aa MW: 8908.14 Da PI: 9.5679 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33 | 1.2e-10 | 50 | 69 | 1 | 20 |
---SS-EEEEEEE--TT-SS CS WRKY 1 ldDgynWrKYGqKevkgsef 20 ldDgy+WrKYGqK vk+s+ Medtr5g029850.1 50 LDDGYRWRKYGQKAVKNSPI 69 59***************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.2E-12 | 35 | 69 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-9 | 42 | 69 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 11.669 | 45 | 68 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-6 | 51 | 68 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 76 aa Download sequence Send to blast |
MNTCSEKTEL KKNDDIKEKE QKVSLVSIKT KEKEREPRFA FMTKSEVDHL DDGYRWRKYG 60 QKAVKNSPIH IHIDT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.19325 | 8e-54 | glandular trichome| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g029850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC119413 | 4e-76 | AC119413.16 Medicago truncatula clone mth2-19p2, complete sequence. | |||
GenBank | CR954195 | 4e-76 | CR954195.3 Medicago truncatula chromosome 5 clone mth2-16p13, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010924354.1 | 1e-20 | WRKY transcription factor 71 | ||||
Swissprot | Q8VWJ2 | 4e-17 | WRK28_ARATH; WRKY transcription factor 28 | ||||
TrEMBL | G7KDQ0 | 3e-48 | G7KDQ0_MEDTR; WRKY family transcription factor | ||||
STRING | AES95817 | 2e-33 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7294 | 32 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18170.1 | 2e-19 | WRKY DNA-binding protein 28 |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g029850.1 |
Entrez Gene | 11419722 |
Publications ? help Back to Top | |||
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