PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g029320.1
Common NameMTR_5g029320
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HD-ZIP
Protein Properties Length: 802aa    MW: 89135.1 Da    PI: 6.0946
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g029320.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.7e-2090145156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  Medtr5g029320.1  90 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMK 145
                      688899***********************************************998 PP
2START139.82.7e-442905132206
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                      la + ++elvk+ + +ep+W +s    n  evl   e ++v             + ea r+s+vv+m++++lv  +ld   +W e ++    +a
  Medtr5g029320.1 290 LAASSMAELVKMCQMNEPLWIRSE---NDREVLNFDEHARVfqwplnlkqrneLRNEATRDSAVVIMNSVTLVDAFLDAQ-KWMELFPtivaRA 379
                      78899******************9...556666666565667778889999999**************************.99999999999** PP

                      EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS
            START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165
                       t++ i sg      g+lqlm ae+q+lsplv+ R+  f+Ry++q  ++g+w+ivd  vds q++  + s+ +  ++ Sg++i++++ng+s+vt
  Medtr5g029320.1 380 RTVQIIASGasghasGTLQLMHAEFQVLSPLVStRETHFLRYCQQnAEEGTWAIVDFPVDSFQQNF-HNSCPKYCRRSSGCVIQDMPNGYSRVT 472
                      ****************************************************************99.888888889****************** PP

                      EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      wveh+ + ++ +h+++   v sg+a+ga++w+  lqrqce+
  Medtr5g029320.1 473 WVEHAKVVEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCER 513
                      ***************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-1978148IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-2084152IPR009057Homeodomain-like
PROSITE profilePS5007116.82787147IPR001356Homeobox domain
SMARTSM003891.6E-1888151IPR001356Homeobox domain
CDDcd000861.65E-1790148No hitNo description
PfamPF000469.5E-1890145IPR001356Homeobox domain
PROSITE patternPS000270122145IPR017970Homeobox, conserved site
PROSITE profilePS5084841.609280516IPR002913START domain
SuperFamilySSF559614.67E-29282515No hitNo description
CDDcd088751.49E-107284512No hitNo description
SMARTSM002345.2E-27289513IPR002913START domain
PfamPF018529.0E-37290513IPR002913START domain
SuperFamilySSF559611.17E-17541776No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MYGDCQVMST MGGNVVVNSE SLFSSPIHNS NFNFMSTMPF QPFSSSMKEE EGILRGKEEI  60
MDQSGSGSEQ VEDKSGNEQE INNEQQATKK KRYHRHTARQ IQEMEALFKE CPHPDDKQRL  120
KLSHDLGLKP RQVKFWFQNR RTQMKAQQDR SDNVILRAEN ESLKNENYRL QSALRNILCP  180
NCGGPCIMGP DMGFDDHQLR FENARLKEEL ERVCCITSRY TGRPLQTMAP PSSLMPPSLD  240
LDMNIYPRHF DPMPPCTEMI PVPMLPPEPS QFQEGGLLLM EDEKSLAMEL AASSMAELVK  300
MCQMNEPLWI RSENDREVLN FDEHARVFQW PLNLKQRNEL RNEATRDSAV VIMNSVTLVD  360
AFLDAQKWME LFPTIVARAR TVQIIASGAS GHASGTLQLM HAEFQVLSPL VSTRETHFLR  420
YCQQNAEEGT WAIVDFPVDS FQQNFHNSCP KYCRRSSGCV IQDMPNGYSR VTWVEHAKVV  480
EKPVHQIFSN YVYSGMAFGA QRWLGVLQRQ CERVASLMAR NISDLGVIPS PEARKSLMKL  540
ANRMIKTFSL NMTTCGGQSW TAISDSPEDT VRITTRKITE PGQPSGVILA AVSTTWLPYT  600
HTKVFDLLRD ERHRSQMDAL SNGNSLNEVA HIANGSHPGN CISLLRINVA SNSSQNVELM  660
LQESCTDQSG SLVVYTTVDV DSVQLAMSGQ DPSCIALLPQ GFMIVPMVSS NADTSSEQGV  720
TGTPSSTASA NAANSGCLLI MGMQVLASTI PSAKLNLSSV TAINNHLCNT LHQIESALCS  780
SSNNNCFVGS CNEPTTSAPS K*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g029320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT4857960.0CT485796.1 Medicago truncatula chromosome 5 clone mth2-154i23, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612811.10.0homeobox-leucine zipper protein ROC3
RefseqXP_024639712.10.0homeobox-leucine zipper protein ROC3
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLG7KCC40.0G7KCC4_MEDTR; Homeobox leucine zipper protein
STRINGAES957690.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]