PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g028850.1
Common NameMTR_5g028850
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 403aa    MW: 43301.6 Da    PI: 6.5786
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g028850.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1666.4e-21306368163
                      XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                      e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L+ e+++++ e+++l se+
  Medtr5g028850.1 306 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRADVLKEENASLRLEVNRIRSEYDQLLSEN 368
                      89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.7E-30197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.3E-55135273No hitNo description
Gene3DG3DSA:1.20.5.1709.7E-18299365No hitNo description
SMARTSM003386.9E-22306370IPR004827Basic-leucine zipper domain
PfamPF001706.1E-20306368IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.944308371IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.69E-11309365No hitNo description
CDDcd147022.87E-23311362No hitNo description
PROSITE patternPS000360313328IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGNSEMDKTT REKESKTPPP TSQEQPSTTT STGQVNTDWA SFQAYSPMPP HGFMASSPQA  60
HPYMWGVQHM MPPYGTPPHP YVAMYPHGGI YAHPSMPPGS YPYPYAMPAP NGIAEASGNT  120
PASMETDGKP PEVKEKLPIK RSKGSLGSLN MITGKNNEHG KTEGTSVNGL HSKSGESGSY  180
EGTSEGSDAN SQNGSQLKSG DRLDSFEGEP SQNGSSVHTS QNGGLNAPHT VVNQTMSILP  240
ISASGAPGAV AGPTTNLNIG MDYWNAPNSS NIPALRGKVP PTTVAGAVVT GGSRDSVQSQ  300
LWLQDERELK RQRRKQSNRE SARRSRLRKQ AECDELAQRA DVLKEENASL RLEVNRIRSE  360
YDQLLSENAA LKERLGEQPG NDQHMCNDTQ QSGHTEVVQD GH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322328RRSRLRK
2322329RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g028850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612774.20.0bZIP transcription factor 16 isoform X1
SwissprotQ501B21e-159BZP16_ARATH; bZIP transcription factor 16
TrEMBLG7KB040.0G7KB04_MEDTR; BZIP transcription factor family protein
STRINGAES957320.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-122basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]