PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr5g027550.1 | ||||||||
Common Name | MTR_5g027550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | MYB_related | ||||||||
Protein Properties | Length: 230aa MW: 26561.9 Da PI: 9.3449 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.9 | 3.7e-16 | 76 | 122 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r WT+ E++l++++vk++G g+Wk I+r++ k++t+ q+ s+ qky Medtr5g027550.1 76 RVHWTEGEHKLFLQGVKKHGRGRWKDISREFVKTKTPTQIASHAQKY 122 668*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.31 | 71 | 127 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.38E-17 | 72 | 127 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-16 | 74 | 125 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.4E-9 | 75 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-13 | 76 | 122 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-11 | 76 | 122 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.93E-10 | 79 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MEGRKVQQLP HHIDLNERTS IQDLPENSLD QQREKLDTVV EFGRAVAIPN SNDNNLGQAE 60 LVPEGSHEAK RGRKERVHWT EGEHKLFLQG VKKHGRGRWK DISREFVKTK TPTQIASHAQ 120 KYFVHHQTAK EIEKKKKRRS IHDITLNNND TIVTVPLEQQ EATHRIEKQH EIPPQDTATL 180 NNKDNDNDNL QQTQQMYQLA LLYPIGTALP DMNKLEKMRN LFNLLAKDL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 138 | KKKKRR |
2 | 134 | 138 | KKKRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr5g027550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU914128 | 0.0 | CU914128.2 Medicago truncatula chromosome 5 clone mth2-84e4, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003612666.2 | 1e-170 | transcription factor MYB1R1 | ||||
TrEMBL | G7K884 | 1e-168 | G7K884_MEDTR; MYB-like DNA-binding domain, shaqkyf class protein | ||||
STRING | AES95624 | 1e-169 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16911 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 7e-21 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Medtr5g027550.1 |
Entrez Gene | 11416946 |
Publications ? help Back to Top | |||
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