PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr5g027440.1

Common Name

MTR_5g027440

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

G2-like

Protein Properties

Length: 279aa MW: 31419.2 Da PI: 6.3554

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr5g027440.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.9	4.8e-33	25	79	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Medtr5g027440.1 25 KPRLRWTTDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 79 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.816	22	82	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.7E-32	22	79	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-24	25	80	IPR006447	Myb domain, plants
SuperFamily	SSF46689	4.3E-16	25	81	IPR009057	Homeodomain-like
Pfam	PF00249	6.9E-9	27	78	IPR001005	SANT/Myb domain
Pfam	PF14379	5.4E-21	122	168	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MMESGGRGGI EGYDGMMMTM TRDPKPRLRW TTDLHDRFVD AVTKLGGPDK ATPKSVLRLM 60 GLKGLTLYHL KSHLQKYRLG QHARKQNEEQ FKENNRCSYV NFSNHSSGTN TNYGGDNEGG 120 EIQIGEALRQ QIEVQKRLEE QLEVQNKLQM RIEAQGKYLQ AVLEKAQTSL PQDGPGNLDA 180 SKAQLAEFNS ALTNFMENMN KDSKENILDM NEFHNKNHAQ AFNYQEVIGT EEHKELKPQV 240 EGGAVQLDLN IKGGNEHLVS ADGAEMESNM VSYRVYHF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-18	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	25	82	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr5g027440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU914133	0.0	CU914133.2 Medicago truncatula chromosome 5 clone mth2-150o3, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003612656.2	0.0	myb family transcription factor PHL11
Swissprot	C0SVS4	6e-77	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	G7K874	0.0	G7K874_MEDTR; Myb-like transcription factor family protein
STRING	AES95614	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-77	G2-like family protein

Link Out ? help Back to Top
Phytozome	Medtr5g027440.1
Entrez Gene	11409568

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]