PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g021930.1
Common NameMTR_5g021930, WUS
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WOX
Protein Properties Length: 303aa    MW: 33981.3 Da    PI: 6.9032
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g021930.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox628.9e-202889257
                     T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     ++R+t+t++q+++L++l+++   r psae++++++++l    +++ ++V++WFqN++a+e++
  Medtr5g021930.1 28 STRWTPTTDQIRILKDLYYNngIRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 89
                     58*****************8567*************************************97 PP
2Wus_type_Homeobox113.51.1e-362791265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
    Medtr5g021930.1 27 SSTRWTPTTDQIRILKDLYYnNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 91
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-122195IPR009057Homeodomain-like
PROSITE profilePS5007110.9162490IPR001356Homeobox domain
SMARTSM003891.3E-52694IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-72989IPR009057Homeodomain-like
PfamPF000463.5E-172989IPR001356Homeobox domain
CDDcd000861.39E-72991No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEQPQQQQQP QTQQHSPNNG IMGSRQSSTR WTPTTDQIRI LKDLYYNNGI RSPSAEQIQR  60
ISARLRQYGK IEGKNVFYWF QNHKARERQK KRFTSDVNVV PIIQRAPNNN TIISAANWKP  120
DHHEQQQNIN VHTNHSTYNI SSAGLSSASC SSAEMVTVGQ IGNYGYGSVP MEKSFRECTI  180
SAGCSSSQVG STINPHIGWI GHHVDPYSSA YANLFEKIRP NEEIMEEYDQ GQENGSPEIE  240
TLPLFPMHGE DIHGGYCNLK SNSSNYGGWY QAEDAGFMYG SRTTSLELSL NSYGCRSPDY  300
AN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In the active shoot meristem, it is specifically expressed in a small cell group underneath the presume position of stem cells. {ECO:0000269|PubMed:12208843}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g021930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4776810.0FJ477681.1 Medicago truncatula WUSCHEL (WUS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612158.10.0protein WUSCHEL
SwissprotQ8LL112e-69WUS_PETHY; Protein WUSCHEL
TrEMBLB7UCW40.0B7UCW4_MEDTR; Putative transcription factor Homobox-WOX family
STRINGAES951160.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-45WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]