PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr5g007600.1
Common NameMTR_5g007600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 332aa    MW: 37215.5 Da    PI: 9.7266
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr5g007600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.92.9e-18159193135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+ +TplWR gp g+ktLCnaCG++yr+ +l
  Medtr5g007600.1 159 CHHCGADNTPLWRTGPGGPKTLCNACGVRYRSGRL 193
                      *******************************9885 PP
2GATA62.16.9e-20261295135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C++Cg+ +Tp+WR gpdg+ktLCnaCG++yr+ +l
  Medtr5g007600.1 261 CHHCGADNTPQWRVGPDGPKTLCNACGVRYRSGRL 295
                      *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.191153189IPR000679Zinc finger, GATA-type
SMARTSM004016.0E-17153203IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.94E-15155216No hitNo description
Gene3DG3DSA:3.30.50.108.0E-15156190IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.31E-13158205No hitNo description
PROSITE patternPS003440159184IPR000679Zinc finger, GATA-type
PfamPF003204.0E-16159193IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.519255291IPR000679Zinc finger, GATA-type
SMARTSM004011.6E-16255305IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15257318No hitNo description
Gene3DG3DSA:3.30.50.101.0E-14259292IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.98E-13260317No hitNo description
PfamPF003208.8E-18261295IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEALDSVDDL WGFLSDIGED DYDKSRKAFP SVDLDDTNHS FSEFAVEDLE WLSNKDAFPA  60
VETFVDFSCI QPDISQNQKI APIVENSTSS SNSNNSSNSI TLLSGYNHVK FPVRARSKSR  120
SKPRLGISDT WNHQFAWKQP NNKTSKEQAK QTSTIGRQCH HCGADNTPLW RTGPGGPKTL  180
CNACGVRYRS GRLVPEYRPA KSPTFCNNVH SNSHRKVVEI ILSKPHLGIS DTWNRQFTWK  240
QPSNNTSKEQ SKKTSTIGRK CHHCGADNTP QWRVGPDGPK TLCNACGVRY RSGRLVPEYR  300
PANSPTFCSN VHSNSHRKVV EIRKQKRIRI G*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr5g007600.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0276630.0CT027663.2 Medicago truncatula chromosome 5 clone mth2-139g23, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639457.11e-144GATA transcription factor 1
SwissprotQ8LAU91e-37GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A396HLT20.0A0A396HLT2_MEDTR; GATA transcription factor
TrEMBLG7K6G00.0G7K6G0_MEDTR; GATA transcription factor
STRINGAES937980.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85372941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-38GATA transcription factor 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]