PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr4g126900.1 | ||||||||
Common Name | MTR_4g126900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 221aa MW: 25306 Da PI: 9.1546 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.8 | 3.2e-17 | 86 | 141 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rrk+ ++tkeq Le+ F+ +++++ ++ LA++l+L++rq+ vWFqNrRa+ k Medtr4g126900.1 86 RRKKLRLTKEQSSMLESTFKLHNTLNPVQKIALADQLSLKTRQIEVWFQNRRARTK 141 79999*************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 114.7 | 5.4e-37 | 87 | 174 | 1 | 88 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq+++LE++F+ +++L+p +K +la +L l++rq++vWFqnrRARtk+kq+E+dye Lk+++++l++en+rL+ke +eL+ Medtr4g126900.1 87 RKKLRLTKEQSSMLESTFKLHNTLNPVQKIALADQLSLKTRQIEVWFQNRRARTKLKQIEVDYELLKKHCQNLSDENKRLKKELQELK 174 69************************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.82E-18 | 72 | 144 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-16 | 73 | 141 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.135 | 83 | 143 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-15 | 85 | 147 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-14 | 86 | 141 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.76E-12 | 91 | 144 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 118 | 141 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.7E-10 | 143 | 186 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.6E-8 | 143 | 174 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MESDDECNTG LCLGLGMGAT KVKKQKLVNK PVIAPCFDLA FELCSKGEPM NVHNNNKGER 60 INLERHQYYQ NVTCSTDSDN NNNNDRRKKL RLTKEQSSML ESTFKLHNTL NPVQKIALAD 120 QLSLKTRQIE VWFQNRRART KLKQIEVDYE LLKKHCQNLS DENKRLKKEL QELKVVGQFP 180 LCPQRLSSKP VVTHSTLCSS CEQKPLKHNE DQKNNLLIDG * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 135 | 143 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr4g126900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC141864 | 1e-127 | AC141864.7 Medicago truncatula clone mth2-21o24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003610006.1 | 1e-162 | homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 7e-42 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | G7JT79 | 1e-160 | G7JT79_MEDTR; Homeobox associated leucine zipper protein | ||||
STRING | AES92203 | 1e-161 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60390.1 | 4e-35 | homeobox-leucine zipper protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr4g126900.1 |
Entrez Gene | 11443759 |
Publications ? help Back to Top | |||
---|---|---|---|
|